Merge branch 'docker_support' into 'develop'

support base dockerfile and update readme

See merge request jinhai/vecwise_engine!15

Former-commit-id: ea243444bd

.dockerignore

@@ -0,0 +1,3 @@
+.git/
+.gitignore
+.idea/

Dockerfile

@@ -1,9 +1,15 @@
-From continuumio/miniconda
-RUN conda update -y conda
-RUN conda create --name vec_engine python=3.6
-RUN echo "source activate vec_engine" > ~/.bashrc
-ENV PATH /opt/conda/envs/env/bin:$PATH
-#RUN conda install -y faiss-gpu cuda90 -c pytorch
-#RUN pip install flask flask-restful flask_sqlalchemy flask_script pymysql environs
-WORKDIR /root/front-source
-EXPOSE 5000
+FROM nvidia/cuda:9.0-devel-ubuntu16.04
+
+ENV NVIDIA_DRIVER_CAPABILITIES compute,utility
+
+WORKDIR /app
+
+COPY environment.yaml install/miniconda.sh /app/
+
+RUN ./miniconda.sh -p $HOME/miniconda -b -f \
+    && echo ". /root/miniconda/etc/profile.d/conda.sh" >> /root/.bashrc \
+    && /root/miniconda/bin/conda env create -f environment.yaml \
+    && echo "conda activate vec_engine" >> /root/.bashrc \
+    && rm /app/*
+
+COPY . /app

README.md

@@ -1,50 +1,34 @@
-# Vecwise Engine
+# Vecwise Engine Dev Guide
 
-### Geting started
+## Install via Conda
+1.  Install Miniconda first
+    - `bash vecwise_engine/install/miniconda.sh`
 
-- Create .env base on .env.example
+2.  Create environment
 
-- Install Miniconda first
-    - `conda create --name vec_engine python=3.6`
-    - `conda activate vec_engine`
-    - `conda install faiss-gpu cuda90 -c pytorch # For CUDA9.0`
-    - `conda install flask`
-    - `pip install flask-restful flask_sqlalchemy flask_script`
-    - `pip install pymysql environs flask-profiler`
+    - `conda env create -f vecwise_engine/environment.yaml`
 
-### Create Database
+3.  Test your installation
 
-- Install MySQL
+## Install via Docker
+
+1.  Install nvidia-docker
+
+2.  `docker build -t cuda9.0/VecEngine .`
+
+3.  `docker run -it cuda9.0/VecEngine bash`
+
+
+## Create Database
+1. Install MySQL
     - `sudo apt-get update`
     - `sudo apt-get install mariadb-server`
 
-- Create user and database:
+2. Create user and database:
     - `create user vecwise;`
     - `create database vecdata;`
     - `grant all privileges on vecdata.* to 'vecwise'@'%';`
     - `flush privileges;`
 
-- Create table:
-    - `python` # enter python3 interaction environment
-    - `from engine import db`
-    - `db.create_all()`
-
-- table desc
-group_table
-+-------------+--------------+------+-----+---------+----------------+
-| Field       | Type         | Null | Key | Default | Extra          |
-+-------------+--------------+------+-----+---------+----------------+
-| id          | int(11)      | NO   | PRI | NULL    | auto_increment |
-| group_name  | varchar(100) | YES  |     | NULL    |                |
-| file_number | int(11)      | YES  |     | NULL    |                |
-+-------------+--------------+------+-----+---------+----------------+
-
-file_table
-+------------+--------------+------+-----+---------+----------------+
-| Field      | Type         | Null | Key | Default | Extra          |
-+------------+--------------+------+-----+---------+----------------+
-| id         | int(11)      | NO   | PRI | NULL    | auto_increment |
-| group_name | varchar(100) | YES  |     | NULL    |                |
-| filename   | varchar(100) | YES  |     | NULL    |                |
-| row_number | int(11)      | YES  |     | NULL    |                |
-+------------+--------------+------+-----+---------+----------------+
+3. Create table:
+    - `cd vecwise_engine/pyengine && python manager.py create_all`

environment.yaml

@@ -0,0 +1,71 @@
+name: vec_engine
+channels:
+  - pytorch
+  - defaults
+dependencies:
+  - blas=1.0=mkl
+  - ca-certificates=2019.1.23=0
+  - certifi=2019.3.9=py36_0
+  - click=7.0=py36_0
+  - flask=1.0.2=py36_1
+  - intel-openmp=2019.1=144
+  - itsdangerous=1.1.0=py36_0
+  - jinja2=2.10=py36_0
+  - libedit=3.1.20181209=hc058e9b_0
+  - libffi=3.2.1=hd88cf55_4
+  - libgcc-ng=8.2.0=hdf63c60_1
+  - libgfortran-ng=7.3.0=hdf63c60_0
+  - libstdcxx-ng=8.2.0=hdf63c60_1
+  - markupsafe=1.1.1=py36h7b6447c_0
+  - mkl=2019.1=144
+  - mkl_fft=1.0.10=py36ha843d7b_0
+  - mkl_random=1.0.2=py36hd81dba3_0
+  - ncurses=6.1=he6710b0_1
+  - numpy=1.16.2=py36h7e9f1db_0
+  - numpy-base=1.16.2=py36hde5b4d6_0
+  - openssl=1.1.1b=h7b6447c_1
+  - pip=19.0.3=py36_0
+  - python=3.6.8=h0371630_0
+  - readline=7.0=h7b6447c_5
+  - setuptools=40.8.0=py36_0
+  - sqlite=3.27.2=h7b6447c_0
+  - tk=8.6.8=hbc83047_0
+  - werkzeug=0.14.1=py36_0
+  - wheel=0.33.1=py36_0
+  - xz=5.2.4=h14c3975_4
+  - zlib=1.2.11=h7b6447c_3
+  - cuda90=1.0=h6433d27_0
+  - faiss-gpu=1.5.0=py36_cuda9.0_1
+  - pip:
+    - aniso8601==6.0.0
+    - atomicwrites==1.3.0
+    - attrs==19.1.0
+    - chardet==3.0.4
+    - environs==4.1.0
+    - faiss==0.1
+    - flask-httpauth==3.2.4
+    - flask-profiler==1.8.1
+    - flask-restful==0.3.7
+    - flask-script==2.0.6
+    - flask-sqlalchemy==2.3.2
+    - get==2019.3.22
+    - idna==2.8
+    - marshmallow==2.19.1
+    - more-itertools==6.0.0
+    - pluggy==0.9.0
+    - post==2019.3.22
+    - public==2019.3.22
+    - py==1.8.0
+    - pymysql==0.9.3
+    - pytest==4.3.1
+    - python-dotenv==0.10.1
+    - pytz==2018.9
+    - query-string==2019.3.22
+    - request==2019.3.22
+    - requests==2.21.0
+    - simplejson==3.16.0
+    - six==1.12.0
+    - sqlalchemy==1.3.1
+    - urllib3==1.24.1
+prefix: /home/zilliz/opt/app/miniconda3/envs/vec_engine
+

install/miniconda.sh.REMOVED.git-id

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+58cc8994e72d5852a06f40ca7222f5751f773473