diff --git a/internal/datanode/flow_graph_write_node.go b/internal/datanode/flow_graph_write_node.go
index 517f3ed98b..657db18a9a 100644
--- a/internal/datanode/flow_graph_write_node.go
+++ b/internal/datanode/flow_graph_write_node.go
@@ -104,6 +104,10 @@ func (wNode *writeNode) Operate(in []Msg) []Msg {
 		wNode.wbManager.DropChannel(wNode.channelName)
 	}
 
+	if len(fgMsg.dropPartitions) > 0 {
+		wNode.wbManager.DropPartitions(wNode.channelName, fgMsg.dropPartitions)
+	}
+
 	// send delete msg to DeleteNode
 	return []Msg{&res}
 }
diff --git a/internal/datanode/metacache/actions.go b/internal/datanode/metacache/actions.go
index 20d18f4acd..8f6d57b42b 100644
--- a/internal/datanode/metacache/actions.go
+++ b/internal/datanode/metacache/actions.go
@@ -67,6 +67,13 @@ func WithPartitionID(partitionID int64) SegmentFilter {
 	})
 }
 
+func WithPartitionIDs(partitionIDs []int64) SegmentFilter {
+	return SegmentFilterFunc(func(info *SegmentInfo) bool {
+		idSet := typeutil.NewSet(partitionIDs...)
+		return idSet.Contain(info.partitionID)
+	})
+}
+
 func WithSegmentState(states ...commonpb.SegmentState) SegmentFilter {
 	set := typeutil.NewSet(states...)
 	return SegmentFilterFunc(func(info *SegmentInfo) bool {
diff --git a/internal/datanode/syncmgr/task.go b/internal/datanode/syncmgr/task.go
index a2a6af3233..7137411cbf 100644
--- a/internal/datanode/syncmgr/task.go
+++ b/internal/datanode/syncmgr/task.go
@@ -136,6 +136,10 @@ func (t *SyncTask) Run() (err error) {
 	var has bool
 	t.segment, has = t.metacache.GetSegmentByID(t.segmentID)
 	if !has {
+		if t.isDrop {
+			log.Info("segment dropped, discard sync task")
+			return nil
+		}
 		log.Warn("failed to sync data, segment not found in metacache")
 		err := merr.WrapErrSegmentNotFound(t.segmentID)
 		return err
@@ -198,15 +202,15 @@ func (t *SyncTask) Run() (err error) {
 	}
 
 	actions := []metacache.SegmentAction{metacache.FinishSyncing(t.batchSize)}
-	switch {
-	case t.isDrop:
-		actions = append(actions, metacache.UpdateState(commonpb.SegmentState_Dropped))
-	case t.isFlush:
+	if t.isFlush {
 		actions = append(actions, metacache.UpdateState(commonpb.SegmentState_Flushed))
 	}
-
 	t.metacache.UpdateSegments(metacache.MergeSegmentAction(actions...), metacache.WithSegmentIDs(t.segment.SegmentID()))
 
+	if t.isDrop {
+		t.metacache.RemoveSegments(metacache.WithSegmentIDs(t.segment.SegmentID()))
+	}
+
 	log.Info("task done", zap.Float64("flushedSize", totalSize))
 
 	if !t.isFlush {
diff --git a/internal/datanode/syncmgr/task_test.go b/internal/datanode/syncmgr/task_test.go
index d03aa278d7..1f1c91abe9 100644
--- a/internal/datanode/syncmgr/task_test.go
+++ b/internal/datanode/syncmgr/task_test.go
@@ -244,6 +244,7 @@ func (s *SyncTaskSuite) TestRunNormal() {
 	})
 
 	s.Run("with_delta_data", func() {
+		s.metacache.EXPECT().RemoveSegments(mock.Anything, mock.Anything).Return(nil).Once()
 		task := s.getSuiteSyncTask()
 		task.WithTimeRange(50, 100)
 		task.WithMetaWriter(BrokerMetaWriter(s.broker, 1))
diff --git a/internal/datanode/writebuffer/manager.go b/internal/datanode/writebuffer/manager.go
index b0191f7a9a..eea7070a5e 100644
--- a/internal/datanode/writebuffer/manager.go
+++ b/internal/datanode/writebuffer/manager.go
@@ -31,6 +31,7 @@ type BufferManager interface {
 	RemoveChannel(channel string)
 	// DropChannel remove write buffer and perform drop.
 	DropChannel(channel string)
+	DropPartitions(channel string, partitionIDs []int64)
 	// BufferData put data into channel write buffer.
 	BufferData(channel string, insertMsgs []*msgstream.InsertMsg, deleteMsgs []*msgstream.DeleteMsg, startPos, endPos *msgpb.MsgPosition) error
 	// GetCheckpoint returns checkpoint for provided channel.
@@ -259,3 +260,16 @@ func (m *bufferManager) DropChannel(channel string) {
 
 	buf.Close(true)
 }
+
+func (m *bufferManager) DropPartitions(channel string, partitionIDs []int64) {
+	m.mut.RLock()
+	buf, ok := m.buffers[channel]
+	m.mut.RUnlock()
+
+	if !ok {
+		log.Warn("failed to drop partition, channel not maintained in manager", zap.String("channel", channel), zap.Int64s("partitionIDs", partitionIDs))
+		return
+	}
+
+	buf.DropPartitions(partitionIDs)
+}
diff --git a/internal/datanode/writebuffer/manager_test.go b/internal/datanode/writebuffer/manager_test.go
index f8c2d7d1ff..61b3b693a2 100644
--- a/internal/datanode/writebuffer/manager_test.go
+++ b/internal/datanode/writebuffer/manager_test.go
@@ -194,6 +194,27 @@ func (s *ManagerSuite) TestRemoveChannel() {
 	})
 }
 
+func (s *ManagerSuite) TestDropPartitions() {
+	manager := s.manager
+
+	s.Run("drop_not_exist", func() {
+		s.NotPanics(func() {
+			manager.DropPartitions("not_exist_channel", nil)
+		})
+	})
+
+	s.Run("drop_partitions", func() {
+		wb := NewMockWriteBuffer(s.T())
+		wb.EXPECT().DropPartitions(mock.Anything).Return()
+
+		manager.mut.Lock()
+		manager.buffers[s.channelName] = wb
+		manager.mut.Unlock()
+
+		manager.DropPartitions(s.channelName, []int64{1})
+	})
+}
+
 func (s *ManagerSuite) TestMemoryCheck() {
 	manager := s.manager
 	param := paramtable.Get()
diff --git a/internal/datanode/writebuffer/mock_mananger.go b/internal/datanode/writebuffer/mock_mananger.go
index 084b4bec77..0410fb8f1c 100644
--- a/internal/datanode/writebuffer/mock_mananger.go
+++ b/internal/datanode/writebuffer/mock_mananger.go
@@ -105,6 +105,40 @@ func (_c *MockBufferManager_DropChannel_Call) RunAndReturn(run func(string)) *Mo
 	return _c
 }
 
+// DropPartitions provides a mock function with given fields: channel, partitionIDs
+func (_m *MockBufferManager) DropPartitions(channel string, partitionIDs []int64) {
+	_m.Called(channel, partitionIDs)
+}
+
+// MockBufferManager_DropPartitions_Call is a *mock.Call that shadows Run/Return methods with type explicit version for method 'DropPartitions'
+type MockBufferManager_DropPartitions_Call struct {
+	*mock.Call
+}
+
+// DropPartitions is a helper method to define mock.On call
+//   - channel string
+//   - partitionIDs []int64
+func (_e *MockBufferManager_Expecter) DropPartitions(channel interface{}, partitionIDs interface{}) *MockBufferManager_DropPartitions_Call {
+	return &MockBufferManager_DropPartitions_Call{Call: _e.mock.On("DropPartitions", channel, partitionIDs)}
+}
+
+func (_c *MockBufferManager_DropPartitions_Call) Run(run func(channel string, partitionIDs []int64)) *MockBufferManager_DropPartitions_Call {
+	_c.Call.Run(func(args mock.Arguments) {
+		run(args[0].(string), args[1].([]int64))
+	})
+	return _c
+}
+
+func (_c *MockBufferManager_DropPartitions_Call) Return() *MockBufferManager_DropPartitions_Call {
+	_c.Call.Return()
+	return _c
+}
+
+func (_c *MockBufferManager_DropPartitions_Call) RunAndReturn(run func(string, []int64)) *MockBufferManager_DropPartitions_Call {
+	_c.Call.Return(run)
+	return _c
+}
+
 // FlushChannel provides a mock function with given fields: ctx, channel, flushTs
 func (_m *MockBufferManager) FlushChannel(ctx context.Context, channel string, flushTs uint64) error {
 	ret := _m.Called(ctx, channel, flushTs)
diff --git a/internal/datanode/writebuffer/mock_write_buffer.go b/internal/datanode/writebuffer/mock_write_buffer.go
index 2273a01396..033c71f56a 100644
--- a/internal/datanode/writebuffer/mock_write_buffer.go
+++ b/internal/datanode/writebuffer/mock_write_buffer.go
@@ -102,6 +102,39 @@ func (_c *MockWriteBuffer_Close_Call) RunAndReturn(run func(bool)) *MockWriteBuf
 	return _c
 }
 
+// DropPartitions provides a mock function with given fields: partitionIDs
+func (_m *MockWriteBuffer) DropPartitions(partitionIDs []int64) {
+	_m.Called(partitionIDs)
+}
+
+// MockWriteBuffer_DropPartitions_Call is a *mock.Call that shadows Run/Return methods with type explicit version for method 'DropPartitions'
+type MockWriteBuffer_DropPartitions_Call struct {
+	*mock.Call
+}
+
+// DropPartitions is a helper method to define mock.On call
+//   - partitionIDs []int64
+func (_e *MockWriteBuffer_Expecter) DropPartitions(partitionIDs interface{}) *MockWriteBuffer_DropPartitions_Call {
+	return &MockWriteBuffer_DropPartitions_Call{Call: _e.mock.On("DropPartitions", partitionIDs)}
+}
+
+func (_c *MockWriteBuffer_DropPartitions_Call) Run(run func(partitionIDs []int64)) *MockWriteBuffer_DropPartitions_Call {
+	_c.Call.Run(func(args mock.Arguments) {
+		run(args[0].([]int64))
+	})
+	return _c
+}
+
+func (_c *MockWriteBuffer_DropPartitions_Call) Return() *MockWriteBuffer_DropPartitions_Call {
+	_c.Call.Return()
+	return _c
+}
+
+func (_c *MockWriteBuffer_DropPartitions_Call) RunAndReturn(run func([]int64)) *MockWriteBuffer_DropPartitions_Call {
+	_c.Call.Return(run)
+	return _c
+}
+
 // EvictBuffer provides a mock function with given fields: policies
 func (_m *MockWriteBuffer) EvictBuffer(policies ...SyncPolicy) {
 	_va := make([]interface{}, len(policies))
diff --git a/internal/datanode/writebuffer/options.go b/internal/datanode/writebuffer/options.go
index 5dd65ae5ec..c6ad5ebd92 100644
--- a/internal/datanode/writebuffer/options.go
+++ b/internal/datanode/writebuffer/options.go
@@ -42,6 +42,7 @@ func defaultWBOption(metacache metacache.MetaCache) *writeBufferOption {
 			GetSyncStaleBufferPolicy(paramtable.Get().DataNodeCfg.SyncPeriod.GetAsDuration(time.Second)),
 			GetCompactedSegmentsPolicy(metacache),
 			GetSealedSegmentsPolicy(metacache),
+			GetDroppedSegmentPolicy(metacache),
 		},
 	}
 }
diff --git a/internal/datanode/writebuffer/sync_policy.go b/internal/datanode/writebuffer/sync_policy.go
index ac40f1c068..1e5169a3a3 100644
--- a/internal/datanode/writebuffer/sync_policy.go
+++ b/internal/datanode/writebuffer/sync_policy.go
@@ -39,6 +39,14 @@ func wrapSelectSegmentFuncPolicy(fn SelectSegmentFunc, reason string) SelectSegm
 	}
 }
 
+func GetDroppedSegmentPolicy(meta metacache.MetaCache) SyncPolicy {
+	return wrapSelectSegmentFuncPolicy(
+		func(buffers []*segmentBuffer, _ typeutil.Timestamp) []int64 {
+			ids := meta.GetSegmentIDsBy(metacache.WithSegmentState(commonpb.SegmentState_Dropped))
+			return ids
+		}, "segment dropped")
+}
+
 func GetFullBufferPolicy() SyncPolicy {
 	return wrapSelectSegmentFuncPolicy(
 		func(buffers []*segmentBuffer, _ typeutil.Timestamp) []int64 {
diff --git a/internal/datanode/writebuffer/sync_policy_test.go b/internal/datanode/writebuffer/sync_policy_test.go
index e155145816..d87bc553ce 100644
--- a/internal/datanode/writebuffer/sync_policy_test.go
+++ b/internal/datanode/writebuffer/sync_policy_test.go
@@ -73,6 +73,15 @@ func (s *SyncPolicySuite) TestSyncStalePolicy() {
 	s.Equal(0, len(ids), "")
 }
 
+func (s *SyncPolicySuite) TestSyncDroppedPolicy() {
+	metacache := metacache.NewMockMetaCache(s.T())
+	policy := GetDroppedSegmentPolicy(metacache)
+	ids := []int64{1, 2, 3}
+	metacache.EXPECT().GetSegmentIDsBy(mock.Anything).Return(ids)
+	result := policy.SelectSegments([]*segmentBuffer{}, tsoutil.ComposeTSByTime(time.Now(), 0))
+	s.ElementsMatch(ids, result)
+}
+
 func (s *SyncPolicySuite) TestSealedSegmentsPolicy() {
 	metacache := metacache.NewMockMetaCache(s.T())
 	policy := GetSealedSegmentsPolicy(metacache)
diff --git a/internal/datanode/writebuffer/write_buffer.go b/internal/datanode/writebuffer/write_buffer.go
index 8456fb7ac2..9f0f93f304 100644
--- a/internal/datanode/writebuffer/write_buffer.go
+++ b/internal/datanode/writebuffer/write_buffer.go
@@ -46,6 +46,8 @@ type WriteBuffer interface {
 	GetFlushTimestamp() uint64
 	// SealSegments is the method to perform `Sync` operation with provided options.
 	SealSegments(ctx context.Context, segmentIDs []int64) error
+	// DropPartitions mark segments as Dropped of the partition
+	DropPartitions(partitionIDs []int64)
 	// GetCheckpoint returns current channel checkpoint.
 	// If there are any non-empty segment buffer, returns the earliest buffer start position.
 	// Otherwise, returns latest buffered checkpoint.
@@ -168,6 +170,13 @@ func (wb *writeBufferBase) SealSegments(ctx context.Context, segmentIDs []int64)
 	return wb.sealSegments(ctx, segmentIDs)
 }
 
+func (wb *writeBufferBase) DropPartitions(partitionIDs []int64) {
+	wb.mut.RLock()
+	defer wb.mut.RUnlock()
+
+	wb.dropPartitions(partitionIDs)
+}
+
 func (wb *writeBufferBase) SetFlushTimestamp(flushTs uint64) {
 	wb.flushTimestamp.Store(flushTs)
 }
@@ -302,6 +311,14 @@ func (wb *writeBufferBase) sealSegments(_ context.Context, segmentIDs []int64) e
 	return nil
 }
 
+func (wb *writeBufferBase) dropPartitions(partitionIDs []int64) {
+	// mark segment dropped if partition was dropped
+	segIDs := wb.metaCache.GetSegmentIDsBy(metacache.WithPartitionIDs(partitionIDs))
+	wb.metaCache.UpdateSegments(metacache.UpdateState(commonpb.SegmentState_Dropped),
+		metacache.WithSegmentIDs(segIDs...),
+	)
+}
+
 func (wb *writeBufferBase) syncSegments(ctx context.Context, segmentIDs []int64) []*conc.Future[struct{}] {
 	log := log.Ctx(ctx)
 	result := make([]*conc.Future[struct{}], 0, len(segmentIDs))
@@ -549,6 +566,10 @@ func (wb *writeBufferBase) getSyncTask(ctx context.Context, segmentID int64) (sy
 		pack.WithFlush()
 	}
 
+	if segmentInfo.State() == commonpb.SegmentState_Dropped {
+		pack.WithDrop()
+	}
+
 	metrics.DataNodeFlowGraphBufferDataSize.WithLabelValues(fmt.Sprint(paramtable.GetNodeID()), fmt.Sprint(wb.collectionID)).Sub(totalMemSize)
 
 	return wb.serializer.EncodeBuffer(ctx, pack)
diff --git a/internal/datanode/writebuffer/write_buffer_test.go b/internal/datanode/writebuffer/write_buffer_test.go
index 879c8b3fea..22b11ead94 100644
--- a/internal/datanode/writebuffer/write_buffer_test.go
+++ b/internal/datanode/writebuffer/write_buffer_test.go
@@ -369,6 +369,21 @@ func (s *WriteBufferSuite) TestEvictBuffer() {
 	})
 }
 
+func (s *WriteBufferSuite) TestDropPartitions() {
+	wb, err := newWriteBufferBase(s.channelName, s.metacache, s.storageCache, s.syncMgr, &writeBufferOption{
+		pkStatsFactory: func(vchannel *datapb.SegmentInfo) *metacache.BloomFilterSet {
+			return metacache.NewBloomFilterSet()
+		},
+	})
+	s.Require().NoError(err)
+
+	segIDs := []int64{1, 2, 3}
+	s.metacache.EXPECT().GetSegmentIDsBy(mock.Anything).Return(segIDs).Once()
+	s.metacache.EXPECT().UpdateSegments(mock.AnythingOfType("metacache.SegmentAction"), metacache.WithSegmentIDs(segIDs...)).Return().Once()
+
+	wb.dropPartitions([]int64{100, 101})
+}
+
 func TestWriteBufferBase(t *testing.T) {
 	suite.Run(t, new(WriteBufferSuite))
 }