* feat: changes needed to apply tombstones correctly on the life-cycle ingest bacthes
* refactor: adjust the design after discussing with Paul
* feat: apply the coming tombstone on all data but persiting one
* chore: fmt
* fix: build on buffer tombstone
* test: delete & write tests for a parition and some cleanup
* feat: No need add processed tombstones for newly created parquet file in the ingester becasue all deletes before that parquet file is created were applied
* chore: cleanup
* feat: intitial implementation for preparing data to send back to the Querier
* feat: full implementation of prepare_data_to_querier
* fix: apply filters for the batches
* chore: Apply suggestions from code review
Co-authored-by: Carol (Nichols || Goulding) <193874+carols10cents@users.noreply.github.com>
* chore: cleanup
* fix: typos in comments
* fix: typos in comments
* fix: typos in comments
* test: create different scenarios and test them
* chore: fix typos
* test: add tests with deletes
* chore: make pub pub(crate)
* chore: Apply suggestions from code review
Co-authored-by: Jake Goulding <jake.goulding@integer32.com>
* refactor: address review comments
* fix: keep batches in their arrival order
* refactor: not assign unecessary values to enum
* refactor: use bitflags enum
* fix: use bitflags correctly
* chore: Apply suggestions from code review
Co-authored-by: Andrew Lamb <andrew@nerdnetworks.org>
* refactor: avoid using use at the end of the function
* chore: merge main to branch
* fix: fix downgrade versions
* refactor: address review comments
* chore: remove unnecessary comments
* refactor: Make the whole test_utils module test-only and bring paths into module scope
Co-authored-by: Paul Dix <paul@pauldix.net>
Co-authored-by: Carol (Nichols || Goulding) <193874+carols10cents@users.noreply.github.com>
Co-authored-by: Jake Goulding <jake.goulding@integer32.com>
Co-authored-by: Andrew Lamb <andrew@nerdnetworks.org>
Co-authored-by: Carol (Nichols || Goulding) <carol.nichols@gmail.com>
A quick change to perform the ColumnRepo::create_or_get() calls in
parallel (up to a maximum of 3 in-flight at any one time) in order to
mitigate the latency of the call and reduce the overall schema
validation call duration.
The in-flight limit is enforced to avoid starving the DB connection pool
of connections.
Wraps the postgres implementation of the catalog with a MetricDecorator.
This is slightly intrusive, with the metrics registry being pushed into
the PostgresCatalog type in order to decorate the impls returned when
calling the Catalog::repositories() and Catalog::start_transaction()
methods (rather than being a pure decorator) in order to use static
dispatch and let the compiler optimise away as much overhead as
possible.
Adds a MetricDecorator type that wraps a Catalog impl, delegating calls
to the underlying impl and recording per-method call latency broken down
by success/error state.
Fixes#3702. This pulls the min sequence tracking into the LifecycleManager. Because the number requires looking at all other partitions in memory, this was the most efficient place to put it. The manager updates the sequencer state after it calls persist. The number is meant to be a lower bound on the sequence number. Issue #3783 will add functionality for the ingester to ignore replayed data that has already been persisted.
* feat: changes needed to apply tombstones correctly on the life-cycle ingest bacthes
* refactor: adjust the design after discussing with Paul
* feat: apply the coming tombstone on all data but persiting one
* chore: fmt
* fix: build on buffer tombstone
* test: delete & write tests for a parition and some cleanup
* feat: No need add processed tombstones for newly created parquet file in the ingester becasue all deletes before that parquet file is created were applied
* chore: cleanup
Co-authored-by: Paul Dix <paul@pauldix.net>
Co-authored-by: kodiakhq[bot] <49736102+kodiakhq[bot]@users.noreply.github.com>
The _sql_migrations table cannot be created by the `catalog setup`
bootstrap command because it is created before the migrations run, one
of which creates the iox_catalog namespace the catalog operates in.
This change allows the _sql_migrations table to be created in the public
schema to start the migration process, with everything else living in
the iox_catalog schema.
If two callers call create_or_get() for a tombstone, providing the same
(table_id, sequencer_id, sequence_number) triplet but a different
predicate / timestamps the catalog MUST NOT silently continue.
As this is unexpected, this behaviour causes a panic.
If two callers call create_or_get() for a partition, providing the same
partition key & table ID, but different sequence numbers the catalog
MUST NOT continue silently.
As this is unexpected, this behaviour causes a panic.
This commit introduces test cases that ensure that for each of the
tombstone & partition repos:
* create_or_get() is idempotent
* create_or_get() does not silently drop conflicting writes
The former covers the expected use case: callers issuing potentially
multiple calls to create_or_get() with the same args, causing the
catalog impl to transparently turn the subsequent calls into NOPs.
The latter illustrates an issue where multiple calls to create_or_get()
with differing arguments is silently accepted by the catalog, causing
both callers to believe they have committed the (differing) details they
provided. This test is expected to pass but fails in this commit.
This commit changes the iox_catalog test harness so that each test is
run in an independent, randomly generated schema to avoid concurrent
tests interfering with each other.
Each test creates a randomly-named schema, grants permissions to the new
schema, runs the full migration stack against the new schema, and then
executes the code under test.
Allow the caller to set the Postgres schema a migration should be
applied to, rather than restricting the migration to a specific,
hard-coded schema.
BREAKING CHANGE: manually adds a new migration that precedes the
existing migration to ensure the iox_catalog schema exists before
applying the migration. You'll probably have to drop any existing
databases and migrate from scratch:
sqlx database drop; sqlx database create;
* chore: port sqlx-hotswap-pool over from conductor
Co-authored-by: Marko Mikulicic <mkm@influxdata.com>
* chore: workspace hack fixes
* fix: unique schema per test db connection
* fix: adjust search path in catalog pg tests to see if it fixes test schema issue
* fix: actually fixed sqlx hotswap pool test
Co-authored-by: Marko Mikulicic <mkm@influxdata.com>
Co-authored-by: kodiakhq[bot] <49736102+kodiakhq[bot]@users.noreply.github.com>
* feat: allow catalog access w/o a transaction
Now the caller has the full control if they want to use a transaction or
not.
* fix: remove non-transaction-safe `create_many`
* fix: remove unnecessary transactions
* feat: projection pushdown for QueryableBatch
* chore: clean up and remove unwrap
* fix: Add Sync to a Snafu source to have the code compile
* chore: cleanup and add comments for tests
* refactor: Add tests for scanning non existing columns and fix related bugs
* chore: modify comment to trigger auto check in github work
* refactor: catalog Unit of Work (= transaction)
Setup an inteface to handle Units of Work within our catalog. Previously
both the Postgres and the in-mem backend used "mini-transactions on
demand". Now the caller has a clear way to establish boundaries and
gets read and write isolation. A single `Arc<dyn Catalog>` can create as
many `Box<dyn UnitOfWork>` as you like, but note that depending on the
backend you may not scale infinitely (postgres will likely impose
certain limits and the in-mem backend limits concurrency to 1 to keep
things simple).
* docs: improve wording
Co-authored-by: Andrew Lamb <andrew@nerdnetworks.org>
* refactor: rename Unit of Work to Transaction
* test: improve `test_txn_isolation`
* feat: clearify transaction drop semantics
Co-authored-by: Andrew Lamb <andrew@nerdnetworks.org>
Co-authored-by: kodiakhq[bot] <49736102+kodiakhq[bot]@users.noreply.github.com>
* feat: add ProcessedTombstoneRepo
* feat: add function add_parquet_file_with_tombstones
* fix: remove unecessary use
* feat: handling transaction when adding parquet file and its processed tombstones
* feat: tests update catalog for parquet file and processed tombstones
* fix: make add parquet file & its processed tombstones fully transactional
* chore: cleanup
* test: add integration tests for new catalog update functions
* chore: remove catalog_update.rs
* chore: cleanup
* fix: assert the right values
* fix: create unique namespace
* fix: support non transaction create_many
* test: remove tests that do not work in a transaction
* fix: one more case with unique namespace
* chore: more verification around for better understanding why certain tests fail
* fix: compare difference rather than absolute becasue the DB already has data
* fix: fix the argument provided to SQL
* fix: return non-empty processed tombstones
* fix: insert the right parquet file
* chore: remove unsed file
Co-authored-by: kodiakhq[bot] <49736102+kodiakhq[bot]@users.noreply.github.com>
This adds the scaffolding for the ingester server to consume data from Kafka. This ingests data in an in memory structure while creating records in the catalog for any partitions that don't yet exist.
I've removed catalog_update.rs in ingester for now. That was mostly a placeholder and will be going in a combination of handler.rs and data.rs on my next PR which will have some primitive lifecycle wired up.
There's one ugly bit here where the DML write is cloned because it's getting borrowed to output spans and metrics. I'll need to follow up with a refactor to make it so that the DML write's tables can be consumed without it gumming up the metrics stuff.
Co-authored-by: kodiakhq[bot] <49736102+kodiakhq[bot]@users.noreply.github.com>
* refactor: remove InfluxColumnType::IOx
Remove unused column variant - see #3554 for context.
* refactor: reserve SEMANTIC_TYPE_IOX name in proto
Co-authored-by: kodiakhq[bot] <49736102+kodiakhq[bot]@users.noreply.github.com>
* refactor: Debug bounds on Catalog trait
* feat: validate MutableBatch schema
Changes the schema validation code to validate MutableBatch instances
(coming from a pre-parsed LP write, and non-LP-based writes) instead of
parsed LP lines.
* refactor: Send bound on boxed errors
* refactor: clippy
Allow assert_eq!(bool, bool) for readability.
* refactor: no PartialEq<MB Column> for ColumnSchema
Remove the PartialEq<mutable_buffer::Column> for ColumnSchema - it's
definitely more readable as a method call.
Co-authored-by: kodiakhq[bot] <49736102+kodiakhq[bot]@users.noreply.github.com>
* build: don't pull in all of tokio
We already specify the tokio features we need so "full" (all features)
is not necessary.
* build: remove chrono dependency
Appears unused.
Co-authored-by: kodiakhq[bot] <49736102+kodiakhq[bot]@users.noreply.github.com>
This updates the catalog API to make it easier to work with for consumers. I also found a bug in the MemCatalog implementation while refactoring the tests to work with the new API definition. Consumers will now be able to Arc wrap the catalog and use it across awaits.
* Adds TombstoneId and Tombstone to the iox_catalog with associated interfaces
* Adds SequenceNumber new type for use with Tombstone
* Adds Timestamp new type for use with Tombstone
* Adds constraint to the Postgres schema to enforce tombstone uniqueness by table_id, sequencer_id, and sequence_number
Marco Neumann
Nga Tran
Dom Dwyer
Paul Dix
Carol (Nichols || Goulding)
Luke Bond
dependabot[bot]
Marko Mikulicic
Paul Dix
Carol (Nichols || Goulding)