e91d00b10c
chore: Update datafusion + `arrow`/`parquet`/`arrow-flight` to `16.0.0 ( #4851 )
...
* chore: TEMP Update DataFusion to pre-release
* chore: update arrow et al to 16.0.0
* chore: Run cargo hakari tasks
* fix: update reader read_dictionary API
* chore: Update to real Datafusion release
* fix: Update parquet API
* fix: update test
Co-authored-by: CircleCI[bot] <circleci@influxdata.com>
2022-06-14 16:31:40 +00:00
e03bf94420
chore(deps): Bump tokio from 1.18.2 to 1.19.1 ( #4783 )
...
Bumps [tokio](https://github.com/tokio-rs/tokio ) from 1.18.2 to 1.19.1.
- [Release notes](https://github.com/tokio-rs/tokio/releases )
- [Commits](https://github.com/tokio-rs/tokio/compare/tokio-1.18.2...tokio-1.19.1 )
---
updated-dependencies:
- dependency-name: tokio
dependency-type: direct:production
update-type: version-update:semver-minor
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: kodiakhq[bot] <49736102+kodiakhq[bot]@users.noreply.github.com>
2022-06-06 14:15:12 +00:00
3592aa52d8
chore: Update datafusion + `arrow`/`parquet`/`arrow-flight` to `15.0.0` ( #4743 )
...
* chore: Update datafusion + `arrow`/`parquet`/`arrow-flight` to `15.0.0`
* chore: Update APIs
* chore: Run cargo hakari tasks
* feat: normalize parquet file metadata
* chore: update size tests
* chore: add docs on metadata stripping
* chore: TEMP UPDATE TO DF BRANCH
* chore: Update for new API
* fix: Update to latest DF
* fix: cargo hakari
Co-authored-by: CircleCI[bot] <circleci@influxdata.com>
Co-authored-by: Raphael Taylor-Davies <r.taylordavies@googlemail.com>
2022-06-03 10:32:26 +00:00
988bd38e93
refactor: remove unused code ( #4742 )
2022-05-31 11:36:02 +00:00
5a95da7327
refactor: do NOT use ANY file IO for parquet reading ( #4741 )
2022-05-31 11:18:24 +00:00
79c054ffc9
fix: do NOT block in parquet file IO ( #4727 )
...
* fix: do NOT block in parquet file IO
I think for historical reason we were using blocking IO to read parquet
files. With the current streaming `SendableRecordStream` approach this
is technically NOT required anymore.
Now one might think that the sync-async dance that we did is kinda
harmless, but looking at our producition querier I think it is really
bad. The querier seems to be stuck but looking at `strace` and other
health signal it seems it is not entirely dead. Looking at GDB
backtraces it seems that nearly all threads are busy in
`download_and_scan_parquet`. Looking at the tokio docs
(<https://docs.rs/tokio/1.18.2/tokio/task/fn.spawn_blocking.html >)
for `spawn_blocking` (which is used to start the sync download) this
makes sense: tokio only starts replacement threads for the current
runtime thread (which calls `spawn_blocking`) if this does NOT exceed the
runtime thread limit. However we set the runtime thread limit to the
number of CPU cores available to IOx, so this is a limiting factor. This
means that there are only a few threads left to do actual work (I've
seen postgres data flowing back and forth for example) but tokio is not
able to use its full potential anymore. This is esp. bad because the
sync code in `download_and_scan_parquet` then uses `futures` `block_on`
functionality to call back into async code, so it waits for tokio
itself.
The change is rather simple: just use async task spawns.
* fix: use async IO to write stream to temp file
* fix: do not block tokio thread during parquet file reading
* refactor: ensure parquet IO tasks are cancelled if they are not needed anymore
There is no REAL way to cancel sync tasks, but at least we can try our
best.
2022-05-30 13:32:20 +00:00
70856a645f
feat: streaming RecordBatch -> parquet encoding
...
Implements a streaming RecordBatch to Parquet file serialiser.
This impl automatically discovers the schema of the RecordBatch stream,
and accepts &mut destination types (internalising the handle
cloning/etc) to simplify caller usage.
This encoder returns the resulting FileMetaData to allow callers to
inspect the resulting metadata without reading back the file.
Currently unused / not yet plumbed in.
2022-05-20 15:09:26 +01:00
3a33e806c7
chore: Update datafusion + `arrow`/`parquet`/`arrow-flight` to `14.0.0` ( #4619 )
...
* chore: Update datafusion deps
* chore: update arrow/parquet/arrow flight deps
* chore: Run cargo hakari tasks
* chore: Update location of utils
* chore: Update some more APIs
Co-authored-by: CircleCI[bot] <circleci@influxdata.com>
2022-05-17 14:13:03 +00:00
f2bb0fdf77
feat: update to crates.io object_store version ( #4595 )
...
* feat: update to crates.io object_store version
* chore: Run cargo hakari tasks
* fix: tests
* chore: remove object store integration test plumbing
Co-authored-by: CircleCI[bot] <circleci@influxdata.com>
2022-05-13 16:26:07 +00:00
e07bcd40c2
refactor: Remove unused dependencies
...
These were found by iterating over all of the dependencies of each
Cargo.toml, then grepping that crate for the dependency's name. If it
didn't show up, I attempted to remove it.
I left a few dependencies that this process flagged:
* generated_types
- `pbjson`,`serde`. Apparently used by the generated code.
* grpc-router-test-gen
- `prost`. Apparently used by the generated code.
* influxdb_iox
- `heappy`. Doesn't appear used, but is behind enough feature
flags that I don't care to reason about and it's already optional.
- `tikv_jemalloc_sys`. Appears to be setting a feature flag of an
indirect dependency.
* iox_gitops_adapter
- `k8s_openapi`. Appears to be setting a feature flag of an indirect
dependency.
2022-05-06 15:57:58 -04:00
068096e7e1
fix: Rename data_types2 to data_types
2022-05-06 14:45:39 -04:00
0541c6e40f
fix: Remove data_types crate where it's no longer used
2022-05-06 14:45:39 -04:00
ea46830954
fix: Remove iox_object_store crate; move ParquetFilePath to parquet_file
2022-05-06 14:45:36 -04:00
ba8191c1eb
fix: Remove persistence_windows
2022-05-06 11:30:35 -04:00
02893e598c
chore: Update datafusion and upgrade arrow/parquet/arrow-flight to 13 ( #4516 )
...
* chore: Tool for automating arrow version update
* chore: Update datafusion and arrow/parquet/arrow-flight
* fix: update for changes in Arrow API
Co-authored-by: kodiakhq[bot] <49736102+kodiakhq[bot]@users.noreply.github.com>
2022-05-05 00:21:02 +00:00
420c306caa
chore(deps): Bump tokio from 1.17.0 to 1.18.0 ( #4453 )
...
Bumps [tokio](https://github.com/tokio-rs/tokio ) from 1.17.0 to 1.18.0.
- [Release notes](https://github.com/tokio-rs/tokio/releases )
- [Commits](https://github.com/tokio-rs/tokio/compare/tokio-1.17.0...tokio-1.18.0 )
---
updated-dependencies:
- dependency-name: tokio
dependency-type: direct:production
update-type: version-update:semver-minor
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2022-04-28 08:21:17 +00:00
4b47d723b1
refactor: Rename time to iox_time ( #4416 )
...
Signed-off-by: hi-rustin <rustin.liu@gmail.com>
Co-authored-by: kodiakhq[bot] <49736102+kodiakhq[bot]@users.noreply.github.com>
2022-04-26 00:19:59 +00:00
73bed810da
chore: Update arrow, arrow-flight, parquet, tonic, prost, etc ( #4357 )
...
* chore: Update datafusion
* chore: Update arrow/arrow-flight/parquet to 12
* chore: update datafusion correctly
* chore: Update prost, tonic, and dependents
* fix: Fixup some api changes
* fix: Update test output in db
* fix: Update test output in parquet_file
* fix: remove old pbjson types
* fix: Add "--experimental_allow_proto3_optional" flag
* chore: Run cargo hakari tasks
* fix: compile error
* chore: Update heappy
Co-authored-by: CircleCI[bot] <circleci@influxdata.com>
Co-authored-by: kodiakhq[bot] <49736102+kodiakhq[bot]@users.noreply.github.com>
2022-04-20 11:12:17 +00:00
5c69a3f43b
chore: Update deps: datafusion, arrow/arrow-flight/parquet to 11, zstd to 0.11 ( #4119 )
...
* chore: update datafusion
* chore(deps): Bump arrow from 10.0.0 to 11.0.0
Bumps [arrow](https://github.com/apache/arrow-rs ) from 10.0.0 to 11.0.0.
- [Release notes](https://github.com/apache/arrow-rs/releases )
- [Changelog](https://github.com/apache/arrow-rs/blob/master/CHANGELOG.md )
- [Commits](https://github.com/apache/arrow-rs/compare/10.0.0...11.0.0 )
---
updated-dependencies:
- dependency-name: arrow
dependency-type: direct:production
update-type: version-update:semver-major
...
Signed-off-by: dependabot[bot] <support@github.com>
* chore(deps): Bump arrow-flight from 10.0.0 to 11.0.0
Bumps [arrow-flight](https://github.com/apache/arrow-rs ) from 10.0.0 to 11.0.0.
- [Release notes](https://github.com/apache/arrow-rs/releases )
- [Changelog](https://github.com/apache/arrow-rs/blob/master/CHANGELOG.md )
- [Commits](https://github.com/apache/arrow-rs/compare/10.0.0...11.0.0 )
---
updated-dependencies:
- dependency-name: arrow-flight
dependency-type: direct:production
update-type: version-update:semver-major
...
Signed-off-by: dependabot[bot] <support@github.com>
* chore: update parquet to 11.0.0
* fix: error on create schema, test for same
* fix: upgrade zstd
* chore: Run cargo hakari tasks
* fix: fix logical merge conflict
* fix: hakari
* fix: hakari
* fix: update newly introduced dep
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: CircleCI[bot] <circleci@influxdata.com>
Co-authored-by: kodiakhq[bot] <49736102+kodiakhq[bot]@users.noreply.github.com>
2022-03-24 15:27:36 +00:00
2c3d30ca32
chore: Update datafusion, arrow, flight and parquet ( #4000 )
...
* chore: Update datafusion, arrow, flight and parquet
* fix: api change
* fix: fmt
* fix: update test metadata size
* fix: Update sizes in parquet test
* fix: more metadata size update
2022-03-10 12:24:47 +00:00
8f3e44bf76
refactor: Extract a crate for shared data types in the new design
2022-03-02 12:16:15 -05:00
b63f920d4c
chore(deps): Bump parquet from 9.0.2 to 9.1.0 ( #3828 )
...
* chore(deps): Bump parquet from 9.0.2 to 9.1.0
Bumps [parquet](https://github.com/apache/arrow-rs ) from 9.0.2 to 9.1.0.
- [Release notes](https://github.com/apache/arrow-rs/releases )
- [Changelog](https://github.com/apache/arrow-rs/blob/master/CHANGELOG.md )
- [Commits](https://github.com/apache/arrow-rs/compare/9.0.2...9.1.0 )
---
updated-dependencies:
- dependency-name: parquet
dependency-type: direct:production
update-type: version-update:semver-minor
...
Signed-off-by: dependabot[bot] <support@github.com>
* chore: update chunk size test
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Raphael Taylor-Davies <r.taylordavies@googlemail.com>
Co-authored-by: kodiakhq[bot] <49736102+kodiakhq[bot]@users.noreply.github.com>
2022-02-23 11:25:15 +00:00
3b7d31c88a
chore(deps): Bump arrow from 9.0.2 to 9.1.0 ( #3826 )
...
Bumps [arrow](https://github.com/apache/arrow-rs ) from 9.0.2 to 9.1.0.
- [Release notes](https://github.com/apache/arrow-rs/releases )
- [Changelog](https://github.com/apache/arrow-rs/blob/master/CHANGELOG.md )
- [Commits](https://github.com/apache/arrow-rs/compare/9.0.2...9.1.0 )
---
updated-dependencies:
- dependency-name: arrow
dependency-type: direct:production
update-type: version-update:semver-minor
...
Signed-off-by: dependabot[bot] <support@github.com>
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
2022-02-23 09:25:46 +00:00
ad3868ed7c
chore(deps): Bump tokio from 1.16.1 to 1.17.0 ( #3814 )
...
* chore(deps): Bump tokio from 1.16.1 to 1.17.0
Bumps [tokio](https://github.com/tokio-rs/tokio ) from 1.16.1 to 1.17.0.
- [Release notes](https://github.com/tokio-rs/tokio/releases )
- [Commits](https://github.com/tokio-rs/tokio/compare/tokio-1.16.1...tokio-1.17.0 )
---
updated-dependencies:
- dependency-name: tokio
dependency-type: direct:production
update-type: version-update:semver-minor
...
Signed-off-by: dependabot[bot] <support@github.com>
* build: update workspace-hack
Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com>
Co-authored-by: Dom Dwyer <dom@itsallbroken.com>
Co-authored-by: kodiakhq[bot] <49736102+kodiakhq[bot]@users.noreply.github.com>
2022-02-22 16:27:43 +00:00
a30803e692
chore: Update datafusion, update `arrow`/`parquet`/`arrow-flight` to 9.0 ( #3733 )
...
* chore: Update datafusion
* chore: Update arrow
* fix: missing updates
* chore: Update cargo.lock
* fix: update for smaller parquet size
* fix: update test for smaller parquet files
* test: ensure parquet_file tests write multiple row groups
* fix: update callsite
* fix: Update for tests
* fix: harkari
* fix: use IoxObjectStore::existing
Co-authored-by: kodiakhq[bot] <49736102+kodiakhq[bot]@users.noreply.github.com>
2022-02-15 12:10:24 +00:00
22778a3a80
chore: upgrade rskafka and parking_lot ( #3592 )
2022-02-01 11:50:42 +00:00
bf89162fa5
refactor: Move IoxMetadata to parquet_file
2022-01-31 10:36:33 -05:00
5488c257d1
chore: Update datafusion, upgrade to arrow/parqet/arrow-flight 8.0.0 ( #3517 )
...
* chore: Update datafusion
* chore: update to arrow 8
* fix: update to use new DataFusion APIs
* fix: update case for sortedness
* fix: cargo hakari
2022-01-27 13:33:27 +00:00
dd23056efd
chore: update datafusion, arrow, prost, tonic, pbjson, etc ( #3455 )
...
* chore: update datafusion, arrow, prost, tonic, etc
* fix: update pprof as well
* chore: update hakari
* fix: update pbjson
* chore: update heappy
* fix: hakari
* fix: workaround https://github.com/influxdata/influxdb_iox/issues/3458
Co-authored-by: kodiakhq[bot] <49736102+kodiakhq[bot]@users.noreply.github.com>
2022-01-13 17:07:15 +00:00
f3f6f335a9
chore: upgrade to snafu 0.7 ( #3440 )
2022-01-11 19:22:36 +00:00
7499eac067
fix: Disable uuid serde feature; we're not actually serializing any UUIDs
...
Connects to #3117 .
2021-12-06 09:37:31 -05:00
02c297e850
fix: Always specify the parking_lot feature of tokio to get potential perf boost
2021-12-06 09:37:15 -05:00
0b24b3c227
fix: Use a consistent version specifier when depending on the futures crate
2021-12-06 09:37:12 -05:00
9fd4a560f5
feat: Results of running cargo hakari manage-deps
2021-11-19 09:21:57 -05:00
c540b40f05
chore(deps): bump tokio from 1.12.0 to 1.13.0
...
Bumps [tokio](https://github.com/tokio-rs/tokio ) from 1.12.0 to 1.13.0.
- [Release notes](https://github.com/tokio-rs/tokio/releases )
- [Commits](https://github.com/tokio-rs/tokio/compare/tokio-1.12.0...tokio-1.13.0 )
---
updated-dependencies:
- dependency-name: tokio
dependency-type: direct:production
update-type: version-update:semver-minor
...
Signed-off-by: dependabot[bot] <support@github.com>
2021-11-01 11:21:59 +00:00
bc7244c48e
chore: use Rust edition 2021
2021-10-25 10:58:20 +02:00
a82dc6f5f0
chore: Update datafusion + arrow ( #2903 )
...
* chore: Update datafusion to latest, arrow to 6.0.0
* fix: Update tests
* fix: bubble internal error
Co-authored-by: kodiakhq[bot] <49736102+kodiakhq[bot]@users.noreply.github.com>
2021-10-19 17:14:08 +00:00
d8f35d8ee9
chore: remove unused `parquet_file` => `chrono` dep
2021-10-19 14:45:56 +02:00
b39e01f7ba
feat: migrate PersistenceWindows to TimeProvider ( #2722 ) ( #2798 )
2021-10-11 20:40:00 +00:00
afe34751e7
refactor: split out schema crate ( #2781 )
...
* refactor: split out schema crate
* chore: fix doc
2021-10-11 09:45:08 +00:00
86cee568d5
feat: use upstream pbjson ( #2650 )
...
* feat: use upstream pbjson
* chore: fmt
2021-09-28 16:29:26 +00:00
d7b697dfe9
chore: remove unused `object_store` => `tracker` dep
2021-09-22 11:13:40 +02:00
9c80d32af5
refactor: use normal google timestamps in parquet metadata again
...
We changed from Google timestamp (which use variable-sized integers) to
our own fixed-sized integer timestamps so that the size of the parquet
metadata does not depend on the timestamp. However with the introduction
of compression this is the case anyways (since slightly different
timestamps lead to different compression results) and we need now
derministic timestamps for tests. So there is now point in using our own
timestamp type. Switching back to the variable-sized type also shrinks
the post-compression results a bit.
2021-09-20 09:34:03 +02:00
afc507ae14
feat: compress encoded parquet metadata
...
Depending on the number of columns, this should safe between 60% and
75%.
2021-09-20 09:33:18 +02:00
509c07330d
refactor: decouple `parquet_file` from `query`
2021-09-14 18:26:16 +02:00
bfaba78dc3
refactor: move `predicate` into its own crate
...
Two reasons:
1. I wanna decouple `parquet_file` from `query` (nearly done, needs a
small follow-up PR).
2. `predicate` will have more and more features (like serialization)
which justifies a new home
2021-09-14 17:13:02 +02:00
44918e4afc
feat: migrate chunk metrics ( #2491 )
...
Co-authored-by: kodiakhq[bot] <49736102+kodiakhq[bot]@users.noreply.github.com>
2021-09-09 16:02:16 +00:00
ae6b0e669b
refactor: Extract a database persister type that wraps object store
...
Connects to #2193 .
2021-08-12 15:05:32 -04:00
d41b44d312
feat: use zstd compression when writing parquet files ( #2218 )
...
* feat: use ZSTD when writing parquet files
* fix: test
2021-08-06 18:45:55 +00:00
e92e94caad
chore: Update deps (including arrow 5.1.0, tonic -> 0.5, and prost 0.5) ( #2172 )
...
* chore: Update deps (including arrow 5.0.0 --> arrow 5.1.0)
* chore: update all the things
* refactor: Update serving readiness check due to change in Tonic API
* chore: update more deps
Co-authored-by: kodiakhq[bot] <49736102+kodiakhq[bot]@users.noreply.github.com>
2021-08-05 15:57:38 +00:00
4da8a16c18
chore: update to arrow 5.0 and master datafusion ( #2049 )
...
* chore: update to arrow 5.0 and master datafusion
* fix: Update test for change in object size
2021-07-19 12:49:51 +00:00
4ca2d3e148
chore: move persistence windows related code into own crate
...
The entire persistence windows data structures (including the
checkpoints) have nothing to do with the mutable buffer per se. So lets
move them into their own crate. This also makes `parquet_file` not
longer depend on `mutable_buffer`.
2021-07-05 10:23:58 +02:00
cdab1bed05
feat: persist part+db checkpoint in parquets and catalog
...
This will be required for replay on server startup.
2021-07-05 09:42:46 +02:00
4204127b05
refactor: use protobuf for in-parquet metadata
2021-06-30 16:51:37 +02:00
0a625b50e6
feat: store transaction timestamp in preserved catalog
2021-06-02 09:41:19 +02:00
d3711a5591
refactor: Use ParquetExec from DataFusion to read parquet files ( #1580 )
...
* refactor: use ParquetExec to read parquet files
* fix: test
Co-authored-by: kodiakhq[bot] <49736102+kodiakhq[bot]@users.noreply.github.com>
2021-06-01 14:44:07 +00:00
00e735ef0d
chore: remove unused dependencies ( #1583 )
2021-05-29 10:31:57 +00:00
4fcc04e6c9
chore: enable arrow prettyprint feature ( #1566 )
2021-05-27 10:28:14 +00:00
19a2733d30
feat: preserve transaction metadata in parquets
2021-05-25 09:56:12 +02:00
14ba25f86d
chore: Update datafusion and use released version of arrow crates ( #1546 )
...
* chore: Update datafusion and use released version of arrow crate
* fix: Update for change in API
2021-05-24 15:37:22 +00:00
f9178dbb5f
feat: push metrics into catalog ( #1488 )
...
* feat: push metrics into catalog
* chore: minor cleanup
* fix: include db labels in chunk metric domains
* chore: fmt
* fix: don't allow dropping moving chunks
* chore: further tweaks
* chore: review feedback
* feat: use new_unregistered() for metric instruments instead of default
* chore: use &[KeyValue] instead of &Vec<KeyValue>
* refactor: make GauageValue non default constructible
2021-05-14 17:37:39 +00:00
86771ea629
chore: update arrow/datafusion deps ( #1433 )
...
* chore: update datafusion deps
* chore: update arrow deps
Co-authored-by: kodiakhq[bot] <49736102+kodiakhq[bot]@users.noreply.github.com>
2021-05-05 22:37:31 +00:00
411cf134e9
refactor: explode arrow_deps ( #1425 )
...
* refactor: explode arrow_deps
* chore: workaround doctest bug
2021-05-05 16:59:12 +00:00
1f42eb89cd
feat: implement parquet metadata handling
...
Closes #1379 and contributes to #1380 .
2021-05-05 13:29:16 +02:00
136c35cb88
feat: implement transaction handling for catalog
...
Closes #1253 .
2021-05-03 10:04:35 +02:00
4c23ca8888
feat: full implementation of parquet's read_filter for review
2021-04-16 16:03:24 -04:00
e226b5a820
feat: Use TimestampNanosecondArray for timestamps in IOx ( #1230 )
...
* refactor: Create Arrow arrays using iterators
* feat: use Timestamp64(TimeUnit::Nanosecond) for timestamps
* feat: add support for timestamp array
* fix: update more tests
* fix: remove unecessary code
Co-authored-by: Edd Robinson <me@edd.io>
Co-authored-by: kodiakhq[bot] <49736102+kodiakhq[bot]@users.noreply.github.com>
2021-04-16 15:55:33 +00:00
4a6d6bd7ad
feat: initial work for querying data from parquet file in object store
2021-04-13 13:57:46 -04:00
1997324344
feat: mutable buffer snapshotting ( #1179 )
...
* feat: mutable buffer snapshotting
* chore: review feedback
2021-04-13 12:14:54 +00:00
c2355aca6d
feat: add basic memory tracking ( #1125 )
...
Co-authored-by: kodiakhq[bot] <49736102+kodiakhq[bot]@users.noreply.github.com>
2021-04-07 15:38:24 +00:00
6e01fbc382
feat: ause TableSummary as metadata for parquet chunk's tables and read buffer's read_filter ot get data
2021-04-05 15:37:34 -04:00
4bdf8963e6
feat: continue buidling foundation for writing RB chunks to parquet files
2021-04-02 16:06:25 -04:00
19a453a483
feat: finally have some framework with clear todos for writing a chunk into parquet files
2021-03-31 16:21:53 -04:00
cd409b471f
feat: continue the implementation
2021-03-30 21:31:51 -04:00
0bcd52d5c9
feat: Add more changes
2021-03-30 18:31:09 -04:00
Andrew Lamb
dependabot[bot]
Marco Neumann
Dom Dwyer
Raphael Taylor-Davies
Jake Goulding
Carol (Nichols || Goulding)
二手掉包工程师
Andrew Lamb
Carol (Nichols || Goulding)
Nga Tran