influxdb/tsdb/store.go

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package tsdb // import "github.com/influxdata/influxdb/tsdb"
import (
"errors"
"fmt"
"io"
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"io/ioutil"
"log"
"os"
"path/filepath"
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"sort"
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"strconv"
"strings"
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"sync"
"time"
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"github.com/influxdata/influxdb/influxql"
"github.com/influxdata/influxdb/models"
)
var (
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// ErrShardNotFound gets returned when trying to get a non existing shard.
ErrShardNotFound = fmt.Errorf("shard not found")
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// ErrStoreClosed gets returned when trying to use a closed Store.
ErrStoreClosed = fmt.Errorf("store is closed")
)
const (
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maintenanceCheckInterval = time.Minute
)
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// Store manages shards and indexes for databases.
type Store struct {
mu sync.RWMutex
path string
databaseIndexes map[string]*DatabaseIndex
// shards is a map of shard IDs to the associated Shard.
shards map[uint64]*Shard
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EngineOptions EngineOptions
Logger *log.Logger
closing chan struct{}
wg sync.WaitGroup
opened bool
}
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// NewStore returns a new store with the given path and a default configuration.
// The returned store must be initialized by calling Open before using it.
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func NewStore(path string) *Store {
opts := NewEngineOptions()
opts.Config = NewConfig()
return &Store{
path: path,
EngineOptions: opts,
Logger: log.New(os.Stderr, "[store] ", log.LstdFlags),
}
}
// Path returns the store's root path.
func (s *Store) Path() string { return s.path }
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// Open initializes the store, creating all necessary directories, loading all
// shards and indexes and initializing periodic maintenance of all shards.
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func (s *Store) Open() error {
s.mu.Lock()
defer s.mu.Unlock()
s.closing = make(chan struct{})
s.shards = map[uint64]*Shard{}
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s.databaseIndexes = map[string]*DatabaseIndex{}
s.Logger.Printf("Using data dir: %v", s.Path())
// Create directory.
if err := os.MkdirAll(s.path, 0777); err != nil {
return err
}
// TODO: Start AE for Node
if err := s.loadIndexes(); err != nil {
return err
}
if err := s.loadShards(); err != nil {
return err
}
go s.periodicMaintenance()
s.opened = true
return nil
}
func (s *Store) loadIndexes() error {
dbs, err := ioutil.ReadDir(s.path)
if err != nil {
return err
}
for _, db := range dbs {
if !db.IsDir() {
s.Logger.Printf("Skipping database dir: %s. Not a directory", db.Name())
continue
}
s.databaseIndexes[db.Name()] = NewDatabaseIndex(db.Name())
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}
return nil
}
func (s *Store) loadShards() error {
// loop through the current database indexes
for db := range s.databaseIndexes {
rps, err := ioutil.ReadDir(filepath.Join(s.path, db))
if err != nil {
return err
}
for _, rp := range rps {
// retention policies should be directories. Skip anything that is not a dir.
if !rp.IsDir() {
s.Logger.Printf("Skipping retention policy dir: %s. Not a directory", rp.Name())
continue
}
shards, err := ioutil.ReadDir(filepath.Join(s.path, db, rp.Name()))
if err != nil {
return err
}
for _, sh := range shards {
path := filepath.Join(s.path, db, rp.Name(), sh.Name())
walPath := filepath.Join(s.EngineOptions.Config.WALDir, db, rp.Name(), sh.Name())
// Shard file names are numeric shardIDs
shardID, err := strconv.ParseUint(sh.Name(), 10, 64)
if err != nil {
s.Logger.Printf("%s is not a valid ID. Skipping shard.", sh.Name())
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continue
}
sc := ShardConfig{
Path: path,
WALPath: walPath,
Database: db,
RetentionPolicy: rp.Name(),
}
shard := NewShard(shardID, s.databaseIndexes[db], sc, s.EngineOptions)
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err = shard.Open()
if err != nil {
return fmt.Errorf("failed to open shard %d: %s", shardID, err)
}
s.shards[shardID] = shard
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}
}
}
return nil
}
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// Close closes the store and all associated shards. After calling Close accessing
// shards through the Store will result in ErrStoreClosed being returned.
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func (s *Store) Close() error {
s.mu.Lock()
defer s.mu.Unlock()
if s.opened {
close(s.closing)
}
s.wg.Wait()
for _, sh := range s.shards {
if err := sh.Close(); err != nil {
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return err
}
}
s.opened = false
s.shards = nil
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s.databaseIndexes = nil
return nil
}
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// DatabaseIndexN returns the number of databases indicies in the store.
func (s *Store) DatabaseIndexN() int {
s.mu.RLock()
defer s.mu.RUnlock()
return len(s.databaseIndexes)
}
// Shard returns a shard by id.
func (s *Store) Shard(id uint64) *Shard {
s.mu.RLock()
defer s.mu.RUnlock()
sh, ok := s.shards[id]
if !ok {
return nil
}
return sh
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}
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// Shards returns a list of shards by id.
func (s *Store) Shards(ids []uint64) []*Shard {
s.mu.RLock()
defer s.mu.RUnlock()
a := make([]*Shard, 0, len(ids))
for _, id := range ids {
sh, ok := s.shards[id]
if !ok {
continue
}
a = append(a, sh)
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}
return a
}
// ShardN returns the number of shards in the store.
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func (s *Store) ShardN() int {
s.mu.RLock()
defer s.mu.RUnlock()
return len(s.shards)
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}
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// CreateShard creates a shard with the given id and retention policy on a database.
func (s *Store) CreateShard(database, retentionPolicy string, shardID uint64) error {
s.mu.Lock()
defer s.mu.Unlock()
select {
case <-s.closing:
return ErrStoreClosed
default:
}
// shard already exists
if _, ok := s.shards[shardID]; ok {
return nil
}
// created the db and retention policy dirs if they don't exist
if err := os.MkdirAll(filepath.Join(s.path, database, retentionPolicy), 0700); err != nil {
return err
}
// create the WAL directory
walPath := filepath.Join(s.EngineOptions.Config.WALDir, database, retentionPolicy, fmt.Sprintf("%d", shardID))
if err := os.MkdirAll(walPath, 0700); err != nil {
return err
}
// create the database index if it does not exist
db, ok := s.databaseIndexes[database]
if !ok {
db = NewDatabaseIndex(database)
s.databaseIndexes[database] = db
}
sc := ShardConfig{
Path: filepath.Join(s.path, database, retentionPolicy, strconv.FormatUint(shardID, 10)),
WALPath: walPath,
Database: database,
RetentionPolicy: retentionPolicy,
}
shard := NewShard(shardID, db, sc, s.EngineOptions)
if err := shard.Open(); err != nil {
return err
}
s.shards[shardID] = shard
return nil
}
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// DeleteShard removes a shard from disk.
func (s *Store) DeleteShard(shardID uint64) error {
s.mu.Lock()
defer s.mu.Unlock()
return s.deleteShard(shardID)
}
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// deleteShard removes a shard from disk. Callers of deleteShard need
// to handle locks appropriately.
func (s *Store) deleteShard(shardID uint64) error {
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// ensure shard exists
sh, ok := s.shards[shardID]
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if !ok {
return nil
}
if err := sh.Close(); err != nil {
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return err
}
if err := os.RemoveAll(sh.config.Path); err != nil {
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return err
}
if err := os.RemoveAll(sh.config.WALPath); err != nil {
return err
}
delete(s.shards, shardID)
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return nil
}
// ShardIteratorCreator returns an iterator creator for a shard.
func (s *Store) ShardIteratorCreator(id uint64) influxql.IteratorCreator {
sh := s.Shard(id)
if sh == nil {
return nil
}
return &shardIteratorCreator{sh: sh}
}
// DeleteDatabase will close all shards associated with a database and remove the directory and files from disk.
func (s *Store) DeleteDatabase(name string) error {
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s.mu.Lock()
defer s.mu.Unlock()
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// Close and delete all shards on the database.
for shardID, sh := range s.shards {
if sh.config.Database == name {
// Delete the shard from disk.
if err := s.deleteShard(shardID); err != nil {
return err
}
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}
}
if err := os.RemoveAll(filepath.Join(s.path, name)); err != nil {
return err
}
if err := os.RemoveAll(filepath.Join(s.EngineOptions.Config.WALDir, name)); err != nil {
return err
}
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delete(s.databaseIndexes, name)
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return nil
}
// DeleteRetentionPolicy will close all shards associated with the
// provided retention policy, remove the retention policy directories on
// both the DB and WAL, and remove all shard files from disk.
func (s *Store) DeleteRetentionPolicy(database, name string) error {
s.mu.Lock()
defer s.mu.Unlock()
// Close and delete all shards under the retention policy on the
// database.
for shardID, sh := range s.shards {
if sh.config.Database == database && sh.config.RetentionPolicy == name {
// Delete the shard from disk.
if err := s.deleteShard(shardID); err != nil {
return err
}
}
}
// Remove the rentention policy folder.
if err := os.RemoveAll(filepath.Join(s.path, database, name)); err != nil {
return err
}
// Remove the retention policy folder from the the WAL.
return os.RemoveAll(filepath.Join(s.EngineOptions.Config.WALDir, database, name))
}
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// DeleteMeasurement removes a measurement and all associated series from a database.
func (s *Store) DeleteMeasurement(database, name string) error {
s.mu.Lock()
defer s.mu.Unlock()
// Find the database.
db := s.databaseIndexes[database]
if db == nil {
return nil
}
// Find the measurement.
m := db.Measurement(name)
if m == nil {
return influxql.ErrMeasurementNotFound(name)
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}
// Remove measurement from index.
db.DropMeasurement(m.Name)
// Remove underlying data.
for _, sh := range s.shards {
if sh.config.Database != database {
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continue
}
if err := sh.DeleteMeasurement(m.Name, m.SeriesKeys()); err != nil {
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return err
}
}
return nil
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}
// ShardIDs returns a slice of all ShardIDs under management.
func (s *Store) ShardIDs() []uint64 {
s.mu.RLock()
defer s.mu.RUnlock()
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return s.shardIDs()
}
func (s *Store) shardIDs() []uint64 {
a := make([]uint64, 0, len(s.shards))
for shardID := range s.shards {
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a = append(a, shardID)
}
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return a
}
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// shardsSlice returns an ordered list of shards.
func (s *Store) shardsSlice() []*Shard {
a := make([]*Shard, 0, len(s.shards))
for _, sh := range s.shards {
a = append(a, sh)
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}
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sort.Sort(Shards(a))
return a
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}
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// DatabaseIndex returns the index for a database by its name.
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func (s *Store) DatabaseIndex(name string) *DatabaseIndex {
s.mu.RLock()
defer s.mu.RUnlock()
return s.databaseIndexes[name]
}
// Databases returns all the databases in the indexes
func (s *Store) Databases() []string {
s.mu.RLock()
defer s.mu.RUnlock()
databases := make([]string, 0, len(s.databaseIndexes))
for db := range s.databaseIndexes {
databases = append(databases, db)
}
return databases
}
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// Measurement returns a measurement by name from the given database.
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func (s *Store) Measurement(database, name string) *Measurement {
s.mu.RLock()
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db := s.databaseIndexes[database]
s.mu.RUnlock()
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if db == nil {
return nil
}
return db.Measurement(name)
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}
// DiskSize returns the size of all the shard files in bytes. This size does not include the WAL size.
func (s *Store) DiskSize() (int64, error) {
s.mu.RLock()
defer s.mu.RUnlock()
var size int64
for _, shardID := range s.ShardIDs() {
shard := s.Shard(shardID)
sz, err := shard.DiskSize()
if err != nil {
return 0, err
}
size += sz
}
return size, nil
}
// BackupShard will get the shard and have the engine backup since the passed in time to the writer
func (s *Store) BackupShard(id uint64, since time.Time, w io.Writer) error {
shard := s.Shard(id)
if shard == nil {
return fmt.Errorf("shard %d doesn't exist on this server", id)
}
path, err := relativePath(s.path, shard.config.Path)
if err != nil {
return err
}
return shard.engine.Backup(w, path, since)
}
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// ShardRelativePath will return the relative path to the shard. i.e. <database>/<retention>/<id>
func (s *Store) ShardRelativePath(id uint64) (string, error) {
shard := s.Shard(id)
if shard == nil {
return "", fmt.Errorf("shard %d doesn't exist on this server", id)
}
return relativePath(s.path, shard.config.Path)
}
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// DeleteSeries loops through the local shards and deletes the series data and metadata for the passed in series keys
func (s *Store) DeleteSeries(database string, sources []influxql.Source, condition influxql.Expr) error {
s.mu.RLock()
defer s.mu.RUnlock()
// Find the database.
db := s.DatabaseIndex(database)
if db == nil {
return nil
}
// Expand regex expressions in the FROM clause.
a, err := s.expandSources(sources)
if err != nil {
return err
} else if sources != nil && len(sources) != 0 && len(a) == 0 {
return nil
}
sources = a
measurements, err := measurementsFromSourcesOrDB(db, sources...)
if err != nil {
return err
}
var seriesKeys []string
for _, m := range measurements {
var ids SeriesIDs
var filters FilterExprs
if condition != nil {
// Get series IDs that match the WHERE clause.
ids, filters, err = m.walkWhereForSeriesIds(condition)
if err != nil {
return err
}
// Delete boolean literal true filter expressions.
// These are returned for `WHERE tagKey = 'tagVal'` type expressions and are okay.
filters.DeleteBoolLiteralTrues()
// Check for unsupported field filters.
// Any remaining filters means there were fields (e.g., `WHERE value = 1.2`).
if filters.Len() > 0 {
return errors.New("DROP SERIES doesn't support fields in WHERE clause")
}
} else {
// No WHERE clause so get all series IDs for this measurement.
ids = m.seriesIDs
}
for _, id := range ids {
seriesKeys = append(seriesKeys, m.seriesByID[id].Key)
}
}
// delete the raw series data
if err := s.deleteSeries(database, seriesKeys); err != nil {
return err
}
// remove them from the index
db.DropSeries(seriesKeys)
return nil
}
func (s *Store) deleteSeries(database string, seriesKeys []string) error {
if _, ok := s.databaseIndexes[database]; !ok {
return influxql.ErrDatabaseNotFound(database)
}
for _, sh := range s.shards {
if sh.config.Database != database {
continue
}
if err := sh.DeleteSeries(seriesKeys); err != nil {
return err
}
}
return nil
}
// periodicMaintenance is the method called in a goroutine on the opening of the store
// to perform periodic maintenance of the shards.
func (s *Store) periodicMaintenance() {
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t := time.NewTicker(maintenanceCheckInterval)
for {
select {
case <-t.C:
s.performMaintenance()
case <-s.closing:
t.Stop()
return
}
}
}
// performMaintenance loops through shards and executes any maintenance
// tasks. Those tasks should run in their own goroutines if they will
// take significant time.
func (s *Store) performMaintenance() {
s.mu.Lock()
defer s.mu.Unlock()
for _, sh := range s.shards {
s.performMaintenanceOnShard(sh)
}
}
func (s *Store) performMaintenanceOnShard(shard *Shard) {
defer func() {
if r := recover(); r != nil {
s.Logger.Printf("recovered error in maintenance on shard %d", shard.id)
}
}()
shard.PerformMaintenance()
}
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// ExpandSources expands regex sources and removes duplicates.
// NOTE: sources must be normalized (db and rp set) before calling this function.
func (s *Store) ExpandSources(sources influxql.Sources) (influxql.Sources, error) {
s.mu.Lock()
defer s.mu.Unlock()
return s.expandSources(sources)
}
func (s *Store) expandSources(sources influxql.Sources) (influxql.Sources, error) {
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// Use a map as a set to prevent duplicates.
set := map[string]influxql.Source{}
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// Iterate all sources, expanding regexes when they're found.
for _, source := range sources {
switch src := source.(type) {
case *influxql.Measurement:
// Add non-regex measurements directly to the set.
if src.Regex == nil {
set[src.String()] = src
continue
}
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// Lookup the database.
db := s.databaseIndexes[src.Database]
if db == nil {
return nil, nil
}
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// Loop over matching measurements.
for _, m := range db.measurementsByRegex(src.Regex.Val) {
other := &influxql.Measurement{
Database: src.Database,
RetentionPolicy: src.RetentionPolicy,
Name: m.Name,
}
set[other.String()] = other
}
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default:
return nil, fmt.Errorf("expandSources: unsupported source type: %T", source)
}
}
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// Convert set to sorted slice.
names := make([]string, 0, len(set))
for name := range set {
names = append(names, name)
}
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sort.Strings(names)
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// Convert set to a list of Sources.
expanded := make(influxql.Sources, 0, len(set))
for _, name := range names {
expanded = append(expanded, set[name])
}
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return expanded, nil
}
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// WriteToShard writes a list of points to a shard identified by its ID.
func (s *Store) WriteToShard(shardID uint64, points []models.Point) error {
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s.mu.RLock()
defer s.mu.RUnlock()
select {
case <-s.closing:
return ErrStoreClosed
default:
}
sh, ok := s.shards[shardID]
if !ok {
return ErrShardNotFound
}
return sh.WritePoints(points)
}
func (s *Store) ExecuteShowFieldKeysStatement(stmt *influxql.ShowFieldKeysStatement, database string) (models.Rows, error) {
// NOTE(benbjohnson):
// This function is temporarily moved here until reimplemented in the new query engine.
// Find the database.
db := s.DatabaseIndex(database)
if db == nil {
return nil, nil
}
// Expand regex expressions in the FROM clause.
sources, err := s.ExpandSources(stmt.Sources)
if err != nil {
return nil, err
}
measurements, err := measurementsFromSourcesOrDB(db, sources...)
if err != nil {
return nil, err
}
// Make result.
rows := make(models.Rows, 0, len(measurements))
// Loop through measurements, adding a result row for each.
for _, m := range measurements {
// Create a new row.
r := &models.Row{
Name: m.Name,
Columns: []string{"fieldKey"},
}
// Get a list of field names from the measurement then sort them.
names := m.FieldNames()
sort.Strings(names)
// Add the field names to the result row values.
for _, n := range names {
v := interface{}(n)
r.Values = append(r.Values, []interface{}{v})
}
// Append the row to the result.
rows = append(rows, r)
}
return rows, nil
}
func (s *Store) ExecuteShowSeriesStatement(stmt *influxql.ShowSeriesStatement, database string) (models.Rows, error) {
// NOTE(benbjohnson):
// This function is temporarily moved here until reimplemented in the new query engine.
// Check for time in WHERE clause (not supported).
if influxql.HasTimeExpr(stmt.Condition) {
return nil, errors.New("SHOW SERIES doesn't support time in WHERE clause")
}
// Find the database.
db := s.DatabaseIndex(database)
if db == nil {
return nil, nil
}
// Expand regex expressions in the FROM clause.
sources, err := s.ExpandSources(stmt.Sources)
if err != nil {
return nil, err
}
// Get the list of measurements we're interested in.
measurements, err := measurementsFromSourcesOrDB(db, sources...)
if err != nil {
return nil, err
}
// Create result struct that will be populated and returned.
rows := make(models.Rows, 0, len(measurements))
// Loop through measurements to build result. One result row / measurement.
for _, m := range measurements {
var ids SeriesIDs
var filters FilterExprs
if stmt.Condition != nil {
// Get series IDs that match the WHERE clause.
ids, filters, err = m.walkWhereForSeriesIds(stmt.Condition)
if err != nil {
return nil, err
}
// Delete boolean literal true filter expressions.
filters.DeleteBoolLiteralTrues()
// Check for unsupported field filters.
if filters.Len() > 0 {
return nil, errors.New("SHOW SERIES doesn't support fields in WHERE clause")
}
// If no series matched, then go to the next measurement.
if len(ids) == 0 {
continue
}
} else {
// No WHERE clause so get all series IDs for this measurement.
ids = m.seriesIDs
}
// Make a new row for this measurement.
r := &models.Row{
Name: m.Name,
Columns: m.TagKeys(),
}
// Loop through series IDs getting matching tag sets.
for _, id := range ids {
if s, ok := m.seriesByID[id]; ok {
values := make([]interface{}, 0, len(r.Columns))
// make the series key the first value
values = append(values, s.Key)
for _, column := range r.Columns {
values = append(values, s.Tags[column])
}
// Add the tag values to the row.
r.Values = append(r.Values, values)
}
}
// make the id the first column
r.Columns = append([]string{"_key"}, r.Columns...)
// Append the row.
rows = append(rows, r)
}
if stmt.Limit > 0 || stmt.Offset > 0 {
rows = s.filterShowSeriesResult(stmt.Limit, stmt.Offset, rows)
}
return rows, nil
}
// filterShowSeriesResult will limit the number of series returned based on the limit and the offset.
// Unlike limit and offset on SELECT statements, the limit and offset don't apply to the number of Rows, but
// to the number of total Values returned, since each Value represents a unique series.
func (e *Store) filterShowSeriesResult(limit, offset int, rows models.Rows) models.Rows {
var filteredSeries models.Rows
seriesCount := 0
for _, r := range rows {
var currentSeries [][]interface{}
// filter the values
for _, v := range r.Values {
if seriesCount >= offset && seriesCount-offset < limit {
currentSeries = append(currentSeries, v)
}
seriesCount++
}
// only add the row back in if there are some values in it
if len(currentSeries) > 0 {
r.Values = currentSeries
filteredSeries = append(filteredSeries, r)
if seriesCount > limit+offset {
return filteredSeries
}
}
}
return filteredSeries
}
func (s *Store) ExecuteShowTagValuesStatement(stmt *influxql.ShowTagValuesStatement, database string) (models.Rows, error) {
// NOTE(benbjohnson):
// This function is temporarily moved here until reimplemented in the new query engine.
// Check for time in WHERE clause (not supported).
if influxql.HasTimeExpr(stmt.Condition) {
return nil, errors.New("SHOW TAG VALUES doesn't support time in WHERE clause")
}
// Find the database.
db := s.DatabaseIndex(database)
if db == nil {
return nil, nil
}
// Expand regex expressions in the FROM clause.
sources, err := s.ExpandSources(stmt.Sources)
if err != nil {
return nil, err
}
// Get the list of measurements we're interested in.
measurements, err := measurementsFromSourcesOrDB(db, sources...)
if err != nil {
return nil, err
}
// Make result.
var rows models.Rows
tagValues := make(map[string]stringSet)
for _, m := range measurements {
var ids SeriesIDs
if stmt.Condition != nil {
// Get series IDs that match the WHERE clause.
ids, _, err = m.walkWhereForSeriesIds(stmt.Condition)
if err != nil {
return nil, err
}
// If no series matched, then go to the next measurement.
if len(ids) == 0 {
continue
}
// TODO: check return of walkWhereForSeriesIds for fields
} else {
// No WHERE clause so get all series IDs for this measurement.
ids = m.seriesIDs
}
for k, v := range m.tagValuesByKeyAndSeriesID(stmt.TagKeys, ids) {
_, ok := tagValues[k]
if !ok {
tagValues[k] = v
}
tagValues[k] = tagValues[k].union(v)
}
}
for k, v := range tagValues {
r := &models.Row{
Name: k + "TagValues",
Columns: []string{k},
}
vals := v.list()
sort.Strings(vals)
for _, val := range vals {
v := interface{}(val)
r.Values = append(r.Values, []interface{}{v})
}
rows = append(rows, r)
}
sort.Sort(rows)
return rows, nil
}
// IsRetryable returns true if this error is temporary and could be retried
func IsRetryable(err error) bool {
if err == nil {
return true
}
if strings.Contains(err.Error(), "field type conflict") {
return false
}
return true
}
// relativePath will expand out the full paths passed in and return
// the relative shard path from the store
func relativePath(storePath, shardPath string) (string, error) {
path, err := filepath.Abs(storePath)
if err != nil {
return "", fmt.Errorf("store abs path: %s", err)
}
fp, err := filepath.Abs(shardPath)
if err != nil {
return "", fmt.Errorf("file abs path: %s", err)
}
name, err := filepath.Rel(path, fp)
if err != nil {
return "", fmt.Errorf("file rel path: %s", err)
}
return name, nil
}
// measurementsFromSourcesOrDB returns a list of measurements from the
// sources passed in or, if sources is empty, a list of all
// measurement names from the database passed in.
func measurementsFromSourcesOrDB(db *DatabaseIndex, sources ...influxql.Source) (Measurements, error) {
var measurements Measurements
if len(sources) > 0 {
for _, source := range sources {
if m, ok := source.(*influxql.Measurement); ok {
measurement := db.measurements[m.Name]
if measurement == nil {
continue
}
measurements = append(measurements, measurement)
} else {
return nil, errors.New("identifiers in FROM clause must be measurement names")
}
}
} else {
// No measurements specified in FROM clause so get all measurements that have series.
for _, m := range db.Measurements() {
if m.HasSeries() {
measurements = append(measurements, m)
}
}
}
sort.Sort(measurements)
return measurements, nil
}