Issue #2950851 by mcdruid, alexpott, anavarre: invalid conf file warnings when skip_permissions_hardening is on
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			@ -660,11 +660,14 @@ function drupal_install_system($install_state) {
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 *   An optional bitmask created from various FILE_* constants.
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 * @param $type
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 *   The type of file. Can be file (default), dir, or link.
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 * @param bool $autofix
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 *   (optional) Determines whether to attempt fixing the permissions according
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 *   to the provided $mask. Defaults to TRUE.
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 *
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 * @return
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 *   TRUE on success or FALSE on failure. A message is set for the latter.
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 */
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function drupal_verify_install_file($file, $mask = NULL, $type = 'file') {
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function drupal_verify_install_file($file, $mask = NULL, $type = 'file', $autofix = TRUE) {
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  $return = TRUE;
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  // Check for files that shouldn't be there.
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  if (isset($mask) && ($mask & FILE_NOT_EXIST) && file_exists($file)) {
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			@ -686,7 +689,7 @@ function drupal_verify_install_file($file, $mask = NULL, $type = 'file') {
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        switch ($current_mask) {
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          case FILE_EXIST:
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            if (!file_exists($file)) {
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              if ($type == 'dir') {
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              if ($type == 'dir' && $autofix) {
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                drupal_install_mkdir($file, $mask);
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              }
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              if (!file_exists($file)) {
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			@ -695,32 +698,32 @@ function drupal_verify_install_file($file, $mask = NULL, $type = 'file') {
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            }
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            break;
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          case FILE_READABLE:
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            if (!is_readable($file) && !drupal_install_fix_file($file, $mask)) {
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            if (!is_readable($file)) {
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              $return = FALSE;
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            }
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            break;
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          case FILE_WRITABLE:
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            if (!is_writable($file) && !drupal_install_fix_file($file, $mask)) {
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            if (!is_writable($file)) {
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              $return = FALSE;
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            }
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            break;
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          case FILE_EXECUTABLE:
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            if (!is_executable($file) && !drupal_install_fix_file($file, $mask)) {
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            if (!is_executable($file)) {
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              $return = FALSE;
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            }
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            break;
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          case FILE_NOT_READABLE:
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            if (is_readable($file) && !drupal_install_fix_file($file, $mask)) {
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            if (is_readable($file)) {
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              $return = FALSE;
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            }
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            break;
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          case FILE_NOT_WRITABLE:
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            if (is_writable($file) && !drupal_install_fix_file($file, $mask)) {
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            if (is_writable($file)) {
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              $return = FALSE;
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            }
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            break;
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          case FILE_NOT_EXECUTABLE:
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            if (is_executable($file) && !drupal_install_fix_file($file, $mask)) {
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            if (is_executable($file)) {
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              $return = FALSE;
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            }
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            break;
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			@ -728,6 +731,9 @@ function drupal_verify_install_file($file, $mask = NULL, $type = 'file') {
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      }
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    }
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  }
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  if (!$return && $autofix) {
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    return drupal_install_fix_file($file, $mask);
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  }
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  return $return;
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}
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			@ -436,12 +436,13 @@ function system_requirements($phase) {
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    // directory. This allows additional files in the site directory to be
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    // updated when they are managed in a version control system.
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    if (Settings::get('skip_permissions_hardening')) {
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      $conf_errors[] = t('Protection disabled');
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      $error_value = t('Protection disabled');
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      // If permissions hardening is disabled, then only show a warning for a
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      // writable file, as a reminder, rather than an error.
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      $file_protection_severity = REQUIREMENT_WARNING;
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    }
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    else {
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      $error_value = t('Not protected');
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      // In normal operation, writable files or directories are an error.
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      $file_protection_severity = REQUIREMENT_ERROR;
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      if (!drupal_verify_install_file($site_path, FILE_NOT_WRITABLE, 'dir')) {
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			@ -450,7 +451,7 @@ function system_requirements($phase) {
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    }
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    foreach (['settings.php', 'settings.local.php', 'services.yml'] as $conf_file) {
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      $full_path = $site_path . '/' . $conf_file;
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      if (file_exists($full_path) && (Settings::get('skip_permissions_hardening') || !drupal_verify_install_file($full_path, FILE_EXIST | FILE_READABLE | FILE_NOT_WRITABLE))) {
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      if (file_exists($full_path) && !drupal_verify_install_file($full_path, FILE_EXIST | FILE_READABLE | FILE_NOT_WRITABLE, 'file', !Settings::get('skip_permissions_hardening'))) {
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        $conf_errors[] = t("The file %file is not protected from modifications and poses a security risk. You must change the file's permissions to be non-writable.", ['%file' => $full_path]);
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      }
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    }
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			@ -472,7 +473,7 @@ function system_requirements($phase) {
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        ];
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      }
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      $requirements['configuration_files'] = [
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        'value' => t('Not protected'),
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        'value' => $error_value,
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        'severity' => $file_protection_severity,
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        'description' => $description,
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      ];
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			@ -49,13 +49,16 @@ class SitesDirectoryHardeningTest extends BrowserTestBase {
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    $settings = Settings::getAll();
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    $settings['skip_permissions_hardening'] = TRUE;
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    new Settings($settings);
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    $this->assertTrue(Settings::get('skip_permissions_hardening'), 'Able to set hardening to true');
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    $this->assertTrue(Settings::get('skip_permissions_hardening'), 'Able to set skip permissions hardening to true.');
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    $this->makeWritable($site_path);
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    // Manually trigger the requirements check.
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    $requirements = $this->checkSystemRequirements();
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    $this->assertEqual(REQUIREMENT_WARNING, $requirements['configuration_files']['severity'], 'Warning severity is properly set.');
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    $this->assertEqual($this->t('Protection disabled'), (string) $requirements['configuration_files']['description']['#context']['configuration_error_list']['#items'][0], 'Description is properly set.');
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    $this->assertEquals('Protection disabled', (string) $requirements['configuration_files']['value']);
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    $description = strip_tags(\Drupal::service('renderer')->renderPlain($requirements['configuration_files']['description']));
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    $this->assertContains('settings.php is not protected from modifications and poses a security risk.', $description);
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    $this->assertContains('services.yml is not protected from modifications and poses a security risk.', $description);
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    $this->assertTrue(is_writable($site_path), 'Site directory remains writable when automatically fixing permissions is disabled.');
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    $this->assertTrue(is_writable($settings_file), 'settings.php remains writable when automatically fixing permissions is disabled.');
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			@ -66,7 +69,8 @@ class SitesDirectoryHardeningTest extends BrowserTestBase {
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    new Settings($settings);
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    // Manually trigger the requirements check.
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    $this->checkSystemRequirements();
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    $requirements = $this->checkSystemRequirements();
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    $this->assertEquals('Protected', (string) $requirements['configuration_files']['value']);
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    $this->assertFalse(is_writable($site_path), 'Site directory is protected when automatically fixing permissions is enabled.');
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    $this->assertFalse(is_writable($settings_file), 'settings.php is protected when automatically fixing permissions is enabled.');
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