diff --git a/tools/export/mcuxpresso/.cproject.tmpl b/tools/export/mcuxpresso/.cproject.tmpl
index e715e53759..dc222bf88f 100644
--- a/tools/export/mcuxpresso/.cproject.tmpl
+++ b/tools/export/mcuxpresso/.cproject.tmpl
@@ -21,7 +21,7 @@
 					<folderInfo id="com.crt.advproject.config.exe.{{opts['id']}}.{{opts['uid']['config']}}" name="/" resourcePath="">
 						<toolChain id="com.crt.advproject.toolchain.exe.{{opts['id']}}.{{u.id}}" name="NXP MCU Tools" superClass="com.crt.advproject.toolchain.exe.{{opts['parent_id']}}">
 							<targetPlatform binaryParser="org.eclipse.cdt.core.ELF;org.eclipse.cdt.core.GNU_ELF" id="com.crt.advproject.platform.exe.{{opts['id']}}.{{u.id}}" name="ARM-based MCU ({{opts['name']}})" superClass="com.crt.advproject.platform.exe.{{opts['id']}}"/>
-							<builder buildPath="${workspace_loc:/{{name}}}/{{opts['name']}}" id="com.crt.advproject.builder.exe.{{opts['id']}}.{{u.id}}" keepEnvironmentInBuildfile="false" managedBuildOn="true" parallelBuildOn="true" parallelizationNumber="optimal" name="Gnu Make Builder" superClass="com.crt.advproject.builder.exe.{{opts['id']}}"/>
+							<builder buildPath="${workspace_loc:/{{name}}}/{{opts['name']}}" cleanBuildTarget="mbedclean" id="com.crt.advproject.builder.exe.{{opts['id']}}.{{u.id}}" incrementalBuildTarget="{{opts['ld']['script']}} all" keepEnvironmentInBuildfile="false" managedBuildOn="true" name="Gnu Make Builder" parallelBuildOn="true" parallelizationNumber="optimal" superClass="com.crt.advproject.builder.exe.{{opts['id']}}"/>
 
 							<tool id="com.crt.advproject.cpp.exe.{{opts['id']}}.{{opts['uid']['tool_cpp_compiler']}}" name="MCU C++ Compiler" superClass="com.crt.advproject.cpp.exe.{{opts['id']}}">
 								<option id="com.crt.advproject.cpp.specs.{{u.id}}" name="Specs" superClass="com.crt.advproject.cpp.specs"  value="com.crt.advproject.cpp.specs.newlibnano" valueType="enumerated"/>
@@ -49,7 +49,7 @@
 									<listOptionValue builtIn="false" value="&quot;${ProjDirPath}/{{file}}&quot;"/>
 									{% endfor %}
 								</option>
-                                
+
                                 {% if opts['common']['warnings.syntaxonly'] %}
                                 <option id="gnu.cpp.compiler.option.warnings.syntax.{{u.id}}" superClass="gnu.cpp.compiler.option.warnings.syntax" value="true" valueType="boolean"/>
                                 {% endif %}
@@ -74,14 +74,14 @@
                                 {% if opts['common']['warnings.conversion'] %}
                                 <option id="gnu.cpp.compiler.option.warnings.wconversion.{{u.id}}" name="Warn on implicit conversions (-Wconversion)" superClass="gnu.cpp.compiler.option.warnings.wconversion" value="true" valueType="boolean"/>
                                 {% endif %}
-                                
+
                                 {% if opts['common']['optimization.lto'] %}
 								<option id="com.crt.advproject.cpp.lto.{{u.id}}" name="Enable Link-time optimization (-flto)" superClass="com.crt.advproject.cpp.lto" useByScannerDiscovery="false" value="true" valueType="boolean"/>
                                 {% endif %}
                                 {% if opts['common']['optimization.lto_objects'] %}
 								<option id="com.crt.advproject.cpp.lto.fat.{{u.id}}" name="Fat lto objects (-ffat-lto-objects)" superClass="com.crt.advproject.cpp.lto.fat" useByScannerDiscovery="false" value="true" valueType="boolean"/>
                                 {% endif %}
-                                
+
 								{% if opts['cpp']['verbose'] %}
    								<option id="gnu.cpp.compiler.option.other.verbose.{{u.id}}" name="Verbose (-v)" superClass="gnu.cpp.compiler.option.other.verbose" useByScannerDiscovery="false" value="true" valueType="boolean"/>
                                 {% endif %}
@@ -119,7 +119,7 @@
 									<listOptionValue builtIn="false" value="&quot;${ProjDirPath}/{{file}}&quot;"/>
 									{% endfor %}
 								</option>
-                                
+
                                 {% if opts['common']['warnings.syntaxonly'] %}
                                 <option id="gnu.c.compiler.option.warnings.syntax.{{u.id}}" superClass="gnu.c.compiler.option.warnings.syntax" value="true" valueType="boolean"/>
                                 {% endif %}
@@ -157,7 +157,7 @@
                                 {% if opts['common']['optimization.lto_objects'] %}
 								<option id="com.crt.advproject.gcc.lto.fat.{{u.id}}" name="Fat lto objects (-ffat-lto-objects)" superClass="com.crt.advproject.gcc.lto.fat" useByScannerDiscovery="false" value="true" valueType="boolean"/>
                                 {% endif %}
-                                
+
 								<option id="gnu.c.compiler.option.misc.other.{{u.id}}" superClass="gnu.c.compiler.option.misc.other" useByScannerDiscovery="false" value="-c {{opts['c']['other']}} {{opts['common']['warnings.other']}}" valueType="string"/>
 								<inputType id="com.crt.advproject.compiler.input.{{opts['uid']['tool_c_compiler']}}" superClass="com.crt.advproject.compiler.input"/>
 							</tool>
@@ -230,13 +230,13 @@
 								{% if opts['ld']['other'] != '' %}
 								<option id="gnu.cpp.link.option.flags.{{u.id}}" superClass="gnu.cpp.link.option.flags" useByScannerDiscovery="false"  value="{{opts['ld']['other']}}" valueType="string"/>
 								{% endif %}
-                                
+
                                 {% if opts['common']['optimization.lto'] %}
 								<option id="com.crt.advproject.link.cpp.lto.{{u.id}}" superClass="com.crt.advproject.link.cpp.lto" useByScannerDiscovery="false" value="true" valueType="boolean"/>
 								{% endif %}
 
-								<option id="com.crt.advproject.link.cpp.script.{{u.id}}" name="Linker script" superClass="com.crt.advproject.link.cpp.script" useByScannerDiscovery="false" value="${ProjDirPath}/{{opts['ld']['script']}}"  valueType="string"/>
-								
+								<option id="com.crt.advproject.link.cpp.script.{{u.id}}" name="Linker script" superClass="com.crt.advproject.link.cpp.script" useByScannerDiscovery="false" value="${ProjDirPath}/{{opts['name']}}/{{opts['ld']['script']}}"  valueType="string"/>
+
                                 <option id="com.crt.advproject.link.cpp.multicore.slave.{{u.id}}" name="Multicore configuration" superClass="com.crt.advproject.link.cpp.multicore.slave" useByScannerDiscovery="false"/>
                                 {% if opts['common']['arm.target.fpu.unit_nxp'] %}
 								<option id="com.crt.advproject.link.cpp.fpu.{{u.id}}" name="Floating point" superClass="com.crt.advproject.link.cpp.fpu" useByScannerDiscovery="false" value="com.crt.advproject.link.cpp.fpu.{{opts['common']['arm.target.fpu.unit_nxp']}}" valueType="enumerated"/>
diff --git a/tools/export/mcuxpresso/__init__.py b/tools/export/mcuxpresso/__init__.py
index 00eb1f5ce1..6fed27e34f 100644
--- a/tools/export/mcuxpresso/__init__.py
+++ b/tools/export/mcuxpresso/__init__.py
@@ -16,7 +16,7 @@ limitations under the License.
 
 Title: MCUXpresso exporter.
 
-Description: Creates a managed build project that can be imported by 
+Description: Creates a managed build project that can be imported by
 the MCUXpresso IDE from NXP
 
 Based on GNU ARM Eclipse Exporter from Liviu Ionescu <ilg@livius.net>
@@ -34,7 +34,7 @@ from tools.targets import TARGET_MAP
 from tools.utils import NotSupportedException
 from tools.build_api import prepare_toolchain
 
- 
+
 # =============================================================================
 
 
@@ -185,7 +185,7 @@ class MCUXpresso(GNUARMEclipse):
             opts['ld']['object_files'] = objects
             opts['ld']['user_libraries'] = self.libraries
             opts['ld']['system_libraries'] = self.system_libraries
-            opts['ld']['script'] = self.ld_script
+            opts['ld']['script'] = "linker-script-%s.ld" % id
             opts['cpp_cmd'] = " ".join(toolchain.preproc)
 
             # Unique IDs used in multiple places.
@@ -218,6 +218,8 @@ class MCUXpresso(GNUARMEclipse):
                       '.project', trim_blocks=True, lstrip_blocks=True)
         self.gen_file('mcuxpresso/{0}_cproject.tmpl'.format(target_name), jinja_ctx,
                       '.cproject', trim_blocks=True, lstrip_blocks=True)
+        self.gen_file('mcuxpresso/makefile.targets.tmpl', jinja_ctx,
+                      'makefile.targets', trim_blocks=True, lstrip_blocks=True)
         self.gen_file('mcuxpresso/mbedignore.tmpl', jinja_ctx, '.mbedignore')
 
         print
@@ -230,9 +232,9 @@ class MCUXpresso(GNUARMEclipse):
         Headless build an Eclipse project.
 
         The following steps are performed:
-        - a temporary workspace is created, 
+        - a temporary workspace is created,
         - the project is imported,
-        - a clean build of all configurations is performed and 
+        - a clean build of all configurations is performed and
         - the temporary workspace is removed.
 
         The build results are in the Debug & Release folders.
@@ -326,8 +328,8 @@ class MCUXpresso(GNUARMEclipse):
 
         Once identified, the options are removed from the command lines.
 
-        The options that were not identified are options that do not 
-        have CDT equivalents and will be passed in the 'Other options' 
+        The options that were not identified are options that do not
+        have CDT equivalents and will be passed in the 'Other options'
         categories.
 
         Although this process does not have a very complicated logic,
@@ -470,7 +472,7 @@ class MCUXpresso(GNUARMEclipse):
             self.remove_option(flags['ld_flags'], str)
             if opts['common']['arm.target.fpu.abi'] == 'hard':
                 opts['common']['arm.target.fpu.unit_nxp'] += '.hard'
-        
+
         # Default optimisation level for Release.
         opts['common']['optimization.level'] = '-Os'
 
diff --git a/tools/export/mcuxpresso/makefile.targets.tmpl b/tools/export/mcuxpresso/makefile.targets.tmpl
new file mode 100644
index 0000000000..d5455fb924
--- /dev/null
+++ b/tools/export/mcuxpresso/makefile.targets.tmpl
@@ -0,0 +1,13 @@
+# DO NOT REMOVE! Generated by the MCUXpresso exporter from an mBed project.
+
+mbedclean:
+	$(RM) $(OBJS)
+	$(RM) $(CC_DEPS)$(C++_DEPS)$(C_UPPER_DEPS)$(CXX_DEPS)$(C_DEPS)$(CPP_DEPS)
+	$(RM) $(EXECUTABLES) {{name}}.* linker-script-*.ld
+	-@echo ' '
+
+{% for config, data in options.iteritems() %}
+linker-script-{{config}}.ld: ../{{ld_script}}
+	{{data.cpp_cmd}} {{data.ld.other}} $< -o $@
+{{name}}.elf: linker-script-{{config}}.ld
+{% endfor %}